View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5197_high_2 (Length: 364)
Name: NF5197_high_2
Description: NF5197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5197_high_2 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 44879579 - 44879929
Alignment:
| Q |
14 |
aatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44879579 |
aatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataat |
44879678 |
T |
|
| Q |
114 |
taagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44879679 |
taagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgac |
44879778 |
T |
|
| Q |
214 |
gggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44879779 |
gggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatttaa |
44879878 |
T |
|
| Q |
314 |
ccatttcactctctgttctttgcattttctcaccctctgtggtgctgctca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
44879879 |
ccatttcactctctgttctttgcattttctcaccctgtctgatgctgctca |
44879929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 344
Target Start/End: Original strand, 44861800 - 44862119
Alignment:
| Q |
26 |
gtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgt |
125 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||| | ||| |||||| | |
|
|
| T |
44861800 |
gtattcaatttcaacaattgtatctaacatccaataat-caaacacaacagaataaatgttttagtgtatttatctcttcaacacgagtaaactctatat |
44861898 |
T |
|
| Q |
126 |
--gcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatatt |
223 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44861899 |
atgcattttatgcaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatatt |
44861998 |
T |
|
| Q |
224 |
ggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcact |
323 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| | |||||| || |||||||| ||||| ||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
44861999 |
ggttgatttcatatggatattttcttgccttatctgtgatctacatattgtgtttcgtgatattcggctcagtcttaggtaagaatataactatttcatt |
44862098 |
T |
|
| Q |
324 |
ctctgttctttgcattttctc |
344 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
44862099 |
ctctgttcttggcattttctc |
44862119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 44848132 - 44848439
Alignment:
| Q |
14 |
aatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataat |
113 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||| | |||||||||||||||||||| || |
|
|
| T |
44848132 |
aatacatgactcgtattcaaagtcaacaattgtatctaacatc---taatgcaagcacagcagaatatatgttgtaatgtatttatctgttcaacatgat |
44848228 |
T |
|
| Q |
114 |
taagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgac |
213 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44848229 |
taacctccatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgac |
44848328 |
T |
|
| Q |
214 |
gggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataa |
313 |
Q |
| |
|
|||||||||||| ||||| |||| || ||||||||||| ||||| | |||||| || || |||||||||| ||| |||||| ||| ||||||||||||| |
|
|
| T |
44848329 |
gggccatattggatgatttcatacggctattttcttgccttatcggtgatctacattttatgttttgtgacgtttggctcagtctttggtaagaatataa |
44848428 |
T |
|
| Q |
314 |
ccatttcactc |
324 |
Q |
| |
|
|||||| |||| |
|
|
| T |
44848429 |
ccatttaactc |
44848439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 125 - 339
Target Start/End: Original strand, 44836269 - 44836483
Alignment:
| Q |
125 |
tgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattg |
224 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44836269 |
tgcattttatataggttgttttgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatattg |
44836368 |
T |
|
| Q |
225 |
gttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcactc |
324 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||| ||| |||||||||| || |||| |||| |
|
|
| T |
44836369 |
gatgattacatatggttattttcttgccttatcagcgatatacatgttgtgttttgtgatattcggctcagtcttgggtaagaataaaattatttgactc |
44836468 |
T |
|
| Q |
325 |
tctgttctttgcatt |
339 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
44836469 |
tctattcttggcatt |
44836483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 318
Target Start/End: Original strand, 44897150 - 44897407
Alignment:
| Q |
61 |
aatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggttt |
160 |
Q |
| |
|
||||||||||| || |||| ||||| ||||||||| ||| || || || | |||||||||| ||||| ||||||||| | |||||||||||| ||| |
|
|
| T |
44897150 |
aatgcaaacactgcataatagatgttttagtgtatttttctttttaatatgagtaagctctatacacatttaatgtaggttgtgctgacatcactgattt |
44897249 |
T |
|
| Q |
161 |
atgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagc |
260 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
44897250 |
atgagaagcaacaaaaattgagaatcatgatgaaaatgcatggtcttggtgatggaccatattggatgattacatatggttatttccttgccttatcagt |
44897349 |
T |
|
| Q |
261 |
gatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatt |
318 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||| | |||||||||||||||||||| |
|
|
| T |
44897350 |
gatctacatgttgtgctttgtgatatttggctcagtcctaggtaagaatataaccatt |
44897407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 12927594 - 12927449
Alignment:
| Q |
133 |
atgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgatta |
232 |
Q |
| |
|
||||||||| | || |||||| | ||||| |||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||||||||||| | ||| |
|
|
| T |
12927594 |
atgtaggttgtcctcacatcattagtttacgagaagcaacaaaatttgagaatcatgatgaaaatgcatggtctcggtgatgggccatattggattattt |
12927495 |
T |
|
| Q |
233 |
catatggttattttcttgcattatcagcgatctatatgttgtgttt |
278 |
Q |
| |
|
| || ||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
12927494 |
cttacagttattttcttgccatatcaattatctacatgttgtgttt |
12927449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University