View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198-Insertion-1 (Length: 1015)
Name: NF5198-Insertion-1
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 182 - 609
Target Start/End: Complemental strand, 17258734 - 17258306
Alignment:
| Q |
182 |
tctgctaaaacagaatcataaactcttattta-attcatcaggctcaatcttcacagggacgattttcattggctt-ggtaatagaggcctctcctgatt |
279 |
Q |
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| T |
17258734 |
tctgctaaaacacaatcataaactcttattttcattcatcaggctcaatcttcacagggacgattttcattggctttggtaatagaagcctctcctgatt |
17258635 |
T |
|
| Q |
280 |
taacgtcaccaacataatcagaagttatgttgtccaataacctcttcagtcccactatactgatcggagtctcaattatagctgtgttgcagcaagaatc |
379 |
Q |
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| T |
17258634 |
taacgtcaccaacatcatcggaagttatgtt--ccaatgacctcttcagtcccactttactgatcgaagtctcaattatagttgtgttgcagcaagaatc |
17258537 |
T |
|
| Q |
380 |
gccacattccaagatatcctacagacaataatgaagcaaaattaataaatacatgctgtagaaacgtccttgaaaagttttgataataagtgaatcatct |
479 |
Q |
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| T |
17258536 |
gcgacattctaagatatcctacatacaataatgaagcaaaattaataaatacatgctgcagaaacgtccttgaaaagttttgataataagtgaatcatct |
17258437 |
T |
|
| Q |
480 |
aactttgtcttagcacattttgagaaccggcaaccaaatgaggttcgtcgatagtgtacaatccatcttccagtacattgcatacctagacttattaagt |
579 |
Q |
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| T |
17258436 |
aactttgtcttaccacattttgagaaccggtaaccaaatgaggttcgtcgatagtgtagaatccatcttccggtccattgcatacctaaactgattaagc |
17258337 |
T |
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| Q |
580 |
tcacaaag-tttgagtacttctcaaaaacat |
609 |
Q |
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| T |
17258336 |
tcgcaaagctttaagtacttctcaaagacat |
17258306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 854 - 961
Target Start/End: Complemental strand, 17258273 - 17258164
Alignment:
| Q |
854 |
aaagtccaatctacaaataaaa-tcaacaactaagaaatttgaaaccatgg-attactgcaataacaattaatatagtggatatagcagatacatctaga |
951 |
Q |
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|||| |||||||| |||||||| |||| ||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
17258273 |
aaagaccaatctataaataaaaatcaaaaactaagaaatttgaaagcatgggattactgcaataaaaaataatatagtggatatagcagatacatctaga |
17258174 |
T |
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| Q |
952 |
tacatgagtt |
961 |
Q |
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|||||||||| |
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| T |
17258173 |
tacatgagtt |
17258164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 17258795 - 17258743
Alignment:
| Q |
96 |
ttcaaataagacaacaacgtttaataaagtacacgattaaagccataatccaa |
148 |
Q |
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| T |
17258795 |
ttcaaatagtacaacaccgtttaatgaagtacacgattaaagccataatccaa |
17258743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 735 - 1009
Target Start/End: Complemental strand, 6669042 - 6668761
Alignment:
| Q |
735 |
aagtagttatcaagattttacatctgtcctttaccaaatcaagtagctaaaataagatcaagtagcaaactcattagacgactataaaattcaataattg |
834 |
Q |
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| T |
6669042 |
aagtagttatcaagattttacatctgtcctttaccaaatcaagtagctaaaataagatcaagtagcaaactcattagacgactataaaattcaataattg |
6668943 |
T |
|
| Q |
835 |
gtgttgtaactactgctcaaaagtccaatctacaaat-aaaatc-aacaactaagaaatttgaaaccat-ggattactgcaataacaattaatatagtgg |
931 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6668942 |
gtgttgtaactactgcacaaaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatagtgg |
6668843 |
T |
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| Q |
932 |
atatagcagatacatctagatacatgagttcatca-ctcgaca--tgacataaatccctt-gtgcagtagtggcagtagcaa |
1009 |
Q |
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| T |
6668842 |
atatagcagatacatctagatacatgagttcatcacctcaacaattgacataaatcccttggtgcagtagtggcagtagcaa |
6668761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 615 - 718
Target Start/End: Complemental strand, 6669139 - 6669035
Alignment:
| Q |
615 |
tacatatcataatggaattacaaaaaggaatcagaaagaaatcataacatattttgtcagctatttgtttactctaataataat-aaaatattaacaaag |
713 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
6669139 |
tacatatcattatggaattacaaaaaggaatcagaaagaaatcataacagatgttgtcagctatttgtttactctaataataataaaaaaattaacaaag |
6669040 |
T |
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| Q |
714 |
gagtt |
718 |
Q |
| |
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|||| |
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| T |
6669039 |
tagtt |
6669035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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