View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198-Insertion-11 (Length: 239)
Name: NF5198-Insertion-11
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198-Insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 7544811 - 7544613
Alignment:
| Q |
7 |
aaactttccccgacgcggtaatggccggactagttcccagcaactcttttcaccaccgtcctccgcggtaaacttcggcaccgacatcgtcaccttccga |
106 |
Q |
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| T |
7544811 |
aaactttccccgacgccgtaatggccggacaagttcccagaaactcttttcaccaccgtcctccgcggtaaacttcggcaccgtcatcgccaacttccga |
7544712 |
T |
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| Q |
107 |
tcttgcctcgtcttcatatcactcagatccatttgcaatggaaactttacagtcccaaatataccagtataactcttcctaacactgctacttctctgc |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7544711 |
tcttgcctcgtcttcatatcactcagttccatttgcaatggaaacttcaccgtcccaaatataccagtataactcttcctatcactgctacttctctgc |
7544613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 7554589 - 7554391
Alignment:
| Q |
7 |
aaactttccccgacgcggtaatggccggactagttcccagcaactcttttcaccaccgtcctccgcggtaaacttcggcaccgacatcgtcaccttccga |
106 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||| |
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| T |
7554589 |
aaactttccccgacgccgtaatggccggataagttcccagcaactcttttcaccaccgtcctctgcggtaaacttcggcaccgtcatcgccaacttccga |
7554490 |
T |
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| Q |
107 |
tcttgcctcgtcttcatatcactcagatccatttgcaatggaaactttacagtcccaaatataccagtataactcttcctaacactgctacttctctgc |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7554489 |
tcttgcctcgtcttcatatcactcagttccatttgcaatggaaacttcaccgtcccaaatataccagtataactcttcctatcactgctacttctctgc |
7554391 |
T |
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