View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198-Insertion-12 (Length: 187)
Name: NF5198-Insertion-12
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198-Insertion-12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 9164527 - 9164706
Alignment:
| Q |
8 |
cctgttgctgtaggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaa |
107 |
Q |
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| T |
9164527 |
cctgttgctgtaggttttgaaggactgctgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaa |
9164626 |
T |
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| Q |
108 |
cctggacaaataagattgatccgctgattaatgaaagatgctgaagtctagttcaagccatatgcaagtatttaaaaatg |
187 |
Q |
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| T |
9164627 |
cctggacaaataaaattgatccactgattaatgaaagatgctgaagtctagttcaagccatattcaagtatttaaaaatg |
9164706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 9151712 - 9151891
Alignment:
| Q |
8 |
cctgttgctgtaggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaa |
107 |
Q |
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| T |
9151712 |
cctgttgctgtaggttttgaaggactgttatcaacaggttcttccttaggttccttctgcttagtagcagtcacagcaggaacaccgtcttcgtcgtcaa |
9151811 |
T |
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| Q |
108 |
cctggacaaataagattgatccgctgattaatgaaagatgctgaagtctagttcaagccatatgcaagtatttaaaaatg |
187 |
Q |
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| T |
9151812 |
tctagaaaaataaaattgatccgctgattaacaagatatgctgaaatccaatccaaactataggcaaggatttaaaaatg |
9151891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 9190780 - 9190713
Alignment:
| Q |
10 |
tgttgctgtaggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcag |
77 |
Q |
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| T |
9190780 |
tgttgccgtaggttttgaaggactactttcaacaggttcttctttaggttccttctgctttctagcag |
9190713 |
T |
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