View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5198-Insertion-2 (Length: 980)

Name: NF5198-Insertion-2
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5198-Insertion-2
NF5198-Insertion-2
[»] chr6 (9 HSPs)
chr6 (7-980)||(27095477-27096452)
chr6 (367-439)||(15081654-15081726)
chr6 (357-428)||(11070729-11070799)
chr6 (379-434)||(19247349-19247402)
chr6 (526-569)||(2165527-2165570)
chr6 (526-569)||(2177160-2177203)
chr6 (490-580)||(32254059-32254148)
chr6 (533-566)||(2614472-2614505)
chr6 (533-566)||(17269212-17269245)
[»] chr7 (10 HSPs)
chr7 (9-428)||(8612632-8613069)
chr7 (161-434)||(7324134-7324421)
chr7 (478-571)||(18118537-18118631)
chr7 (530-571)||(676059-676100)
chr7 (478-568)||(30760293-30760384)
chr7 (366-428)||(12130049-12130110)
chr7 (478-575)||(20399996-20400094)
chr7 (533-575)||(26826072-26826114)
chr7 (357-394)||(11070058-11070095)
chr7 (533-579)||(47799929-47799975)
[»] chr3 (9 HSPs)
chr3 (478-580)||(32577466-32577568)
chr3 (468-575)||(33338204-33338311)
chr3 (469-580)||(48950545-48950657)
chr3 (363-434)||(10291143-10291213)
chr3 (368-428)||(11059308-11059367)
chr3 (533-572)||(28229438-28229477)
chr3 (488-574)||(49679304-49679391)
chr3 (533-571)||(33979934-33979972)
chr3 (888-946)||(38927636-38927694)
[»] chr2 (6 HSPs)
chr2 (479-575)||(41072982-41073079)
chr2 (361-428)||(24519886-24519952)
chr2 (469-544)||(17286648-17286723)
chr2 (488-521)||(374536-374569)
chr2 (533-574)||(23459880-23459921)
chr2 (488-575)||(28716572-28716656)
[»] chr8 (7 HSPs)
chr8 (478-562)||(13035090-13035174)
chr8 (473-575)||(15901389-15901493)
chr8 (473-521)||(29916322-29916370)
chr8 (361-393)||(42614540-42614572)
chr8 (530-580)||(24557429-24557479)
chr8 (533-579)||(26749577-26749623)
chr8 (533-575)||(34612564-34612606)
[»] chr5 (10 HSPs)
chr5 (488-575)||(14733510-14733597)
chr5 (478-575)||(43222070-43222168)
chr5 (490-580)||(35650274-35650365)
chr5 (361-434)||(20495047-20495119)
chr5 (485-580)||(2582385-2582481)
chr5 (529-580)||(9465739-9465790)
chr5 (357-434)||(24837061-24837138)
chr5 (530-573)||(3440834-3440877)
chr5 (469-580)||(38283714-38283824)
chr5 (530-580)||(9124954-9125004)
[»] scaffold0417 (1 HSPs)
scaffold0417 (380-439)||(5598-5657)
[»] chr1 (12 HSPs)
chr1 (530-575)||(24413315-24413360)
chr1 (363-428)||(45396934-45396998)
chr1 (533-575)||(26768895-26768937)
chr1 (469-551)||(42720586-42720668)
chr1 (361-426)||(10758937-10759001)
chr1 (533-578)||(49943999-49944044)
chr1 (366-428)||(15736157-15736218)
chr1 (478-547)||(22536737-22536807)
chr1 (487-517)||(42720859-42720889)
chr1 (530-571)||(32887817-32887858)
chr1 (469-569)||(36700860-36700961)
chr1 (469-569)||(36716964-36717065)
[»] scaffold0286 (1 HSPs)
scaffold0286 (526-569)||(16839-16882)
[»] chr4 (4 HSPs)
chr4 (7-66)||(10177855-10177914)
chr4 (537-575)||(4404294-4404332)
chr4 (533-575)||(17080813-17080855)
chr4 (533-574)||(42010117-42010158)
[»] scaffold0020 (1 HSPs)
scaffold0020 (361-434)||(122702-122774)


Alignment Details
Target: chr6 (Bit Score: 834; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 834; E-Value: 0
Query Start/End: Original strand, 7 - 980
Target Start/End: Original strand, 27095477 - 27096452
Alignment:
Q  7 acagtgccacaacagaagttccatttactccctatctgacgaaggcacaaaagaaaaaagcgcttaaggcagcatacctaacccgttctaagggtcctcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||||| |     
T  27095477 acagtgccacaacagaagttccatttactccctatctgacgaatgcacagaagaaaaaagtggttaaggcagcatacctaacccgttctaagggtccgct 27095576  T
Q  107 cccgtcacttcccaaatgaagatgttcacatatttactgagaaggtatatgctctgtttggtttgacacaatgccgtcttttttgtctttagatttcttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27095577 cccgtcacttcccaaatgaagatgttcacatatttactgagagggtatatgctctgtttggtttgacacaatgccgtcttttttgtctttagatttcttg 27095676  T
Q  207 agggacatgaatagcttgcctaactatcgttttccttagaatttatgttgtttctttccgttttatgcaactttttatgagggttttggcatagccccct 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||| ||||||||     
T  27095677 agggacatgaatagcttgcctaactatcgttttccttagaatttatgttggttctttccgttttctgcacctttttctgagggttttggcctagcccccc 27095776  T
Q  307 ctcttgtatatatannnnnnnnnnnnnn-aataatatatatggagtaggcggtttcagttgggtgccaacctagttgggatgtttctggcgctccttgat 405  Q
    ||||||||||||||               |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  27095777 ctcttgtatatatatttttccgtgtttttaataatatatatggagtaggcggtttcagttgggtgtcaacctagttaggatgtttctggcgctccttgat 27095876  T
Q  406 gtctaacctactttttgccttataaaaaacaaaccttttaaggcaagtgtaaaatgagatacaatcctcttgatttaaactattctccatttctttcatt 505  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27095877 gcctaacctactttttgccttataaaaaacaaaccttttaaggcaagtgtaaaatgagatacaatcctctcgatttaaactattctccatttctttcatt 27095976  T
Q  506 tagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgataggacccatcaccgacatgctttattttcttaatgaac 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27095977 tagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgataggacccatcaccgacatgctttattttcttaatgaac 27096076  T
Q  606 aatgggattttgatcaaggataatttgtttaaacgtgtgatgtaaattcagattttcgattgtacattggtggatttagtgttgaagaaaatttaaatca 705  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  27096077 aataggattttgatcaaggataatttgtttaaacgtgtgatgtaaattcagattttcgattgtacattggtggattcagtgttgaagaaaattcaaatca 27096176  T
Q  706 cttttgctttgactgtgtaacgtcttacaaagtttgatgtacgattctgaaatggcttggggggtctcttgtgctctttcaacatcacagttgttcattt 805  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096177 cttttgctttgactgtgtaacgtcttacaaagtttgaagtacgattctgaaatggcttggggggtctcttgtgctctttcaacatcacagttgttcattt 27096276  T
Q  806 ccaccaattatgtggtttacatgtaccttatgtgaagcc-aaagaatattttagtgtcattttgatataacttcaatcattaaattggtggacaaaccca 904  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096277 ccaccaattatgtggtttacatgtaccttatgtgaagccaaaagaatattttagtgtcattttgatataacttcaatcattaaattggtggacaaaccca 27096376  T
Q  905 caacaatgtcttcttaaaatgcatcttagtcatgtgtgatttcttagtcaattgttatggtcttggcctcttgggt 980  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096377 caacaatgtcttcttaaaatgcatcttagtcatgtgtgatttcttagtcaattgttatggtcttggcctcttgggt 27096452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 15081654 - 15081726
Alignment:
Q  367 ggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaacaaac 439  Q
    |||| |||| |||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||| ||||    
T  15081654 ggtgtcaacttagttgggatgtttctagtgttccttgatgtctaacctacttcttgccttataaaaaaaaaac 15081726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 11070729 - 11070799
Alignment:
Q  357 gtttcagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    |||||||| | ||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||||||||    
T  11070729 gtttcagtggagtgccaacctagttgggatgtctct-gtgctccttgatgtctcacctacttcttgccttat 11070799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 19247349 - 19247402
Alignment:
Q  379 gttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaa 434  Q
    |||| ||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  19247349 gttgagatgtttctggcgctccttgatgcctaacctac--tttgccttataaaaaa 19247402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 569
Target Start/End: Complemental strand, 2165570 - 2165527
Alignment:
Q  526 ttttttgaaaataattaatgatggtgagactcatttaatgatag 569  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  2165570 ttttttaaaaataattaatgatagtgagactcatttaatgatag 2165527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 569
Target Start/End: Complemental strand, 2177203 - 2177160
Alignment:
Q  526 ttttttgaaaataattaatgatggtgagactcatttaatgatag 569  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  2177203 ttttttaaaaataattaatgatagtgagactcatttaatgatag 2177160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 490 - 580
Target Start/End: Complemental strand, 32254148 - 32254059
Alignment:
Q  490 ctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 580  Q
    ||||||||| |  |||||||||||||||||||||||   |   ||||||||||||||| ||| |||||| |||||||||||||||| ||||    
T  32254148 ctccatttcctcaatttagagagataaaaacataaaaaataa-aaaataattaatgatagtgggactcacttaatgataggacccaccacc 32254059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 566
Target Start/End: Complemental strand, 2614505 - 2614472
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatga 566  Q
    ||||||||||||||||||| ||||||||||||||    
T  2614505 aaaataattaatgatggtgtgactcatttaatga 2614472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 566
Target Start/End: Complemental strand, 17269245 - 17269212
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatga 566  Q
    ||||||||||||||| ||||||||||||||||||    
T  17269245 aaaataattaatgatagtgagactcatttaatga 17269212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 2e-55; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 8613069 - 8612632
Alignment:
Q  9 agtgccacaacagaagttccatttactccctatctgacgaaggcacaaaagaaaaaagcgcttaaggcagcatacctaacccgttctaagggtcctcccc 108  Q
    |||||||||| ||||||||||||||||| | || ||||||||||||| ||||||||||   |||||||  ||||||||||||||||||||||| | ||||    
T  8613069 agtgccacaatagaagttccatttactctccatttgacgaaggcacagaagaaaaaagtagttaaggcgacatacctaacccgttctaagggttcgcccc 8612970  T
Q  109 cgtcacttcccaaatgaagatgttcacatatttactgagaaggtatatgctctgtttggtttgacacaatgccgtcttttttgtctttagatttcttgag 208  Q
    |||||| |||||||||| ||||||||||||||||  |||| ||||  |||||| ||| ||||||||| ||||  | |||||  |||||||||||||| ||    
T  8612969 cgtcacctcccaaatgatgatgttcacatatttatcgagagggtaactgctctattttgtttgacacgatgcaatatttttcttctttagatttctttag 8612870  T
Q  209 ggacatgaatagcttgcctaactatcgttttccttagaatttatgttgtttctttc------cgttttatgcaactttttatgagggttttggcatagcc 302  Q
    ||| | || || |||||||| ||||||| | |||| ||||||  ||||| ||||||      |||||| |||| |||||||||||||||||||| |||      
T  8612869 ggataggattaacttgcctatctatcgtctccctt-gaattttcgttgtatctttctgttttcgttttctgcatctttttatgagggttttggcctag-t 8612772  T
Q  303 ccctctcttgtatatata-nnnnnnnnnnnnnnaataatatatatggagtaggcggt-------------ttcagttgggtgccaacctagttgggatgt 388  Q
     || ||||||||||||||               |||||||||||||||||| |||||             ||| |||||||| |||||||||||||||||    
T  8612771 tccactcttgtatatatattttttcccttttttaataatatatatggagtaagcggtagaggataggagcttcggttgggtgtcaacctagttgggatgt 8612672  T
Q  389 ttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  8612671 ttctggcgctccttgatgcctaacctacttcttgccttat 8612632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 161 - 434
Target Start/End: Original strand, 7324134 - 7324421
Alignment:
Q  161 tgtttggtttgacacaatgccgtcttttttgtctttagatttcttgagggacatgaatagcttgcctaactatcgttttccttagaatttatgttgtttc 260  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||  ||| ||||||||||| ||||| ||| ||||  ||||||||    
T  7324134 tgtttggtttgacacaattccgtcctttttgtctttagatttctttagggatatgaatttctttcctaactatcgctttccctaggatttccgttgtttc 7324233  T
Q  261 tttccgttttatgcaactttttatgagggttttggcatagccccctctcttgtatatata-nnnnnnnnnnnnnnaataatatatatggagtaggcggt- 358  Q
    |||| ||||  |||| || ||| ||||||||||||| ||| |||| ||||| ||||||||               ||||||||||||||||||||||||     
T  7324234 tttctgtttcctgcatctctttttgagggttttggcctagtcccccctcttttatatatatttttccctttttataataatatatatggagtaggcggta 7324333  T
Q  359 ------------ttcagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaa 434  Q
                |  |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  7324334 gaggatgggagctctagttggatgccaacctagttgggatgtttctggcactccttgatgcctaacctactttttgccttataaaaaa 7324421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 478 - 571
Target Start/End: Complemental strand, 18118631 - 18118537
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgatagga 571  Q
    ||||||| |||||||||||||||  ||||| | ||||||| | |||||   | |||||||||||||||||||||| |||||||||||||||||||    
T  18118631 atttaaattattctccatttcttctatttaaatagataaagatataaaaaatcttgaaaataattaatgatggtgtgactcatttaatgatagga 18118537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 676100 - 676059
Alignment:
Q  530 ttgaaaataattaatgatggtgagactcatttaatgatagga 571  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  676100 ttgaaaataattaatgatggtgagactcatttaatgatagga 676059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 478 - 568
Target Start/End: Complemental strand, 30760384 - 30760293
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgata 568  Q
    ||||||||| |||||||||||||||||||  ||||||||| |||||||   | || |||||||||||||||||||  ||||||| |||||||    
T  30760384 atttaaactcttctccatttctttcatttgtagagataaagacataaaaaatcttaaaaataattaatgatggtgcaactcattcaatgata 30760293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 12130049 - 12130110
Alignment:
Q  366 gggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||    
T  12130049 gggtgctaacctagttgggatgtctctgg-gctccttgatgtctaaccttcttcttgccttat 12130110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 478 - 575
Target Start/End: Original strand, 20399996 - 20400094
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    ||||||| |||| ||||||||||  ||||| | ||||||| |||||||   | || ||||||||||||||| ||| |||||||||||||||| ||||||    
T  20399996 atttaaattattttccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagaccca 20400094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 533 - 575
Target Start/End: Complemental strand, 26826114 - 26826072
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
T  26826114 aaaataattaatgatggttaaactcatttaatgataggaccca 26826072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 11070058 - 11070095
Alignment:
Q  357 gtttcagttgggtgccaacctagttgggatgtttctgg 394  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11070058 gtttcagttggatgccaacctagttgggatgtttctgg 11070095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 533 - 579
Target Start/End: Complemental strand, 47799975 - 47799929
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggacccatcac 579  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  47799975 aaaataattaatgatggtgggacccacttagtgataggacccatcac 47799929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 478 - 580
Target Start/End: Original strand, 32577466 - 32577568
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgataggacccatc 577  Q
    ||||||||| |||||||||||||  |||| |||||||||| ||| |||  | ||||||| ||||||||||||||  |||||||||||||||||||||| |    
T  32577466 atttaaactcttctccatttcttctatttggagagataaagacacaaaaatcttgaaaaaaattaatgatggtggaactcatttaatgataggacccacc 32577565  T
Q  578 acc 580  Q
    |||    
T  32577566 acc 32577568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 468 - 575
Target Start/End: Complemental strand, 33338311 - 33338204
Alignment:
Q  468 aatcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgat 567  Q
    ||||||||  ||||||||| || |||||||||| | |||  ||||||||| ||| |||  | ||||||||| ||||||||| ||||||||||||||||||    
T  33338311 aatcctctccatttaaactcttttccatttcttccgtttgaagagataaagacacaaaaatcttgaaaatagttaatgatgatgagactcatttaatgat 33338212  T
Q  568 aggaccca 575  Q
    ||||||||    
T  33338211 aggaccca 33338204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 469 - 580
Target Start/End: Original strand, 48950545 - 48950657
Alignment:
Q  469 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgat 567  Q
    |||||||  ||||||||| ||||| ||||| | |||||| | ||||||||| | |||   | ||||||||||||||||||||||||||||||||||||||    
T  48950545 atcctctccatttaaactcttctctatttcatccatttacaaagataaaaatacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgat 48950644  T
Q  568 aggacccatcacc 580  Q
    |||| ||| ||||    
T  48950645 aggatccaccacc 48950657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 10291143 - 10291213
Alignment:
Q  363 gttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaa 434  Q
    |||||||||||||||||||| |||||||| ||| |||||| |||||||||||| || ||| |||||||||||    
T  10291143 gttgggtgccaacctagttgagatgtttccggc-ctccttaatgtctaacctatttcttgacttataaaaaa 10291213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 11059367 - 11059308
Alignment:
Q  368 gtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||| ||||    
T  11059367 gtgccaacctagttgggatgtctctgg-gctccttgatatctaacctacttcttgctttat 11059308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 28229477 - 28229438
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggac 572  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  28229477 aaaaaaattaatgatggtgagactcatttaatgataggac 28229438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 574
Target Start/End: Complemental strand, 49679391 - 49679304
Alignment:
Q  488 ttctccatttctttcatttagagagataaaaacata-aattttttgaaaataattaatgatggtgagactcatttaatgataggaccc 574  Q
    |||||||||| ||||||||||||||||||| ||| | ||    |  ||||||||||||||||||| ||| |||||| |||||||||||    
T  49679391 ttctccatttgtttcatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccatttagtgataggaccc 49679304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 533 - 571
Target Start/End: Original strand, 33979934 - 33979972
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgatagga 571  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  33979934 aaaataattaatgatagtgagacttatttaatgatagga 33979972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 888 - 946
Target Start/End: Complemental strand, 38927694 - 38927636
Alignment:
Q  888 attggtggacaaacccacaacaatgtcttcttaaaatgcatcttagtcatgtgtgattt 946  Q
    ||||||||| |||||||| |||||||| |  ||||||||||| || |||||||||||||    
T  38927694 attggtggagaaacccactacaatgtcgtggtaaaatgcatcatattcatgtgtgattt 38927636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 479 - 575
Target Start/End: Complemental strand, 41073079 - 41072982
Alignment:
Q  479 tttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    ||||| || |||||||||||||||||||||||||||||| ||| |||   | || ||||||||||||||| ||||||  |||||||||||||||||||    
T  41073079 tttaatctcttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaataattaatgattgtgagatccatttaatgataggaccca 41072982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 24519886 - 24519952
Alignment:
Q  361 cagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||  |||||||||    
T  24519886 cagtggggtgccaacctagttgggatgtctctgg-gctccttgatgtctaaccttctccttgccttat 24519952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 544
Target Start/End: Complemental strand, 17286723 - 17286648
Alignment:
Q  469 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaat 544  Q
    |||||||  ||||||||| ||||||||||||| |||||  | ||||||| ||| |||| ||||| |||||||||||    
T  17286723 atcctctccatttaaactcttctccatttcttccatttgaaaagataaatacacaaatattttgtaaataattaat 17286648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 521
Target Start/End: Complemental strand, 374569 - 374536
Alignment:
Q  488 ttctccatttctttcatttagagagataaaaaca 521  Q
    |||||| |||||||||||||||||||||||||||    
T  374569 ttctccctttctttcatttagagagataaaaaca 374536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 574
Target Start/End: Complemental strand, 23459921 - 23459880
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggaccc 574  Q
    ||||||||||||||||||| ||| |||||| |||||||||||    
T  23459921 aaaataattaatgatggtgggacccatttagtgataggaccc 23459880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 575
Target Start/End: Complemental strand, 28716656 - 28716572
Alignment:
Q  488 ttctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    |||||||||||||||||||| ||||| ||| ||| ||   |||| ||||||||||||||| ||  ||  ||||||||||||| |||||    
T  28716656 ttctccatttctttcatttaaagagagaaagacacaa---ttttaaaaataattaatgatagtaggatccatttaatgatagaaccca 28716572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 13035090 - 13035174
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcattta 562  Q
    |||||||||||| ||||||||||  ||||||| ||||||| ||| |||  | ||||||||||||||||||||||||| |||||||    
T  13035090 atttaaactattttccatttcttctatttagaaagataaagacacaaaaatcttgaaaataattaatgatggtgagattcattta 13035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 473 - 575
Target Start/End: Original strand, 15901389 - 15901493
Alignment:
Q  473 tcttgatttaaactattctccatttctttcatttagagagataaaaacataaatttt--ttgaaaataattaatgatggtgagactcatttaatgatagg 570  Q
    |||| |||||| || |||| ||||||||  | || |||||||||||||| || ||||  |||||||||||||||||| || |||| |||||||| |||||    
T  15901389 tcttcatttaatctcttcttcatttcttctactttgagagataaaaacacaatttttttttgaaaataattaatgatagtaagacccatttaataatagg 15901488  T
Q  571 accca 575  Q
    |||||    
T  15901489 accca 15901493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 473 - 521
Target Start/End: Original strand, 29916322 - 29916370
Alignment:
Q  473 tcttgatttaaactattctccatttctttcatttagagagataaaaaca 521  Q
    |||| ||||||||| |||| ||||||||||||| |||||||||||||||    
T  29916322 tcttcatttaaactcttcttcatttctttcattcagagagataaaaaca 29916370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 42614540 - 42614572
Alignment:
Q  361 cagttgggtgccaacctagttgggatgtttctg 393  Q
    |||||||||||||||||||||||||||||||||    
T  42614540 cagttgggtgccaacctagttgggatgtttctg 42614572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 530 - 580
Target Start/End: Original strand, 24557429 - 24557479
Alignment:
Q  530 ttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 580  Q
    |||||||||||||||||| || ||||  ||||||||||| |||||||||||    
T  24557429 ttgaaaataattaatgatagtcagacgtatttaatgatatgacccatcacc 24557479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 533 - 579
Target Start/End: Complemental strand, 26749623 - 26749577
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggacccatcac 579  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  26749623 aaaataattaatgatggtgggacccacttagtgataggacccatcac 26749577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 533 - 575
Target Start/End: Original strand, 34612564 - 34612606
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    ||||||||||||||||||||||| || ||| ||||||||||||    
T  34612564 aaaataattaatgatggtgagacccacttagtgataggaccca 34612606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 488 - 575
Target Start/End: Original strand, 14733510 - 14733597
Alignment:
Q  488 ttctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    ||||||||||||| |||||||| ||||||| ||| || ||||||  |||||||||| ||||||| |||||||||||| ||| ||||||    
T  14733510 ttctccatttcttccatttagaaagataaagacacaatttttttttaaataattaacgatggtgggactcatttaataataagaccca 14733597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 478 - 575
Target Start/End: Original strand, 43222070 - 43222168
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacata-aattttttgaaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    ||||||||| | |||||||| ||||||| ||||||||||| ||| | ||  |||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  43222070 atttaaactctgctccatttatttcattcagagagataaagacacataaaattttgaaaataattaatgatggtgggatccatttaatgataagaccca 43222168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 490 - 580
Target Start/End: Original strand, 35650274 - 35650365
Alignment:
Q  490 ctccatttctttcatttagagagataaaaacataaattt-tttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 580  Q
    |||||||||||||||||  ||||||| |||||||||    ||| |||||||||||||||||||| | ||||||||| |||||||||| ||||    
T  35650274 ctccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacc 35650365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 20495047 - 20495119
Alignment:
Q  361 cagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaa 434  Q
    |||| |||||||||||||||| |||||| |||   |||||||||||||| | ||||||||||||||||||||||    
T  20495047 cagtggggtgccaacctagttaggatgtctctaa-gctccttgatgtctcatctactttttgccttataaaaaa 20495119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 580
Target Start/End: Complemental strand, 2582481 - 2582385
Alignment:
Q  485 ctattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 580  Q
    |||||||||||||||||||||| | |||||| | ||| |||   | || |||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  2582481 ctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacc 2582385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 9465739 - 9465790
Alignment:
Q  529 tttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 580  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||| ||||    
T  9465739 tttgaaaataattaatgatggtgaaattcatttaatgataggatccaccacc 9465790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 24837138 - 24837061
Alignment:
Q  357 gtttcagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaa 434  Q
    ||||||||| |||||||||||||||| ||||||||||   || || |||||| |||||| || ||| |||||||||||    
T  24837138 gtttcagttaggtgccaacctagttgagatgtttctgtttcttctcgatgtccaacctatttcttggcttataaaaaa 24837061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 3440834 - 3440877
Alignment:
Q  530 ttgaaaataattaatgatggtgagactcatttaatgataggacc 573  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||    
T  3440834 ttgaaaataattaatgataatgagacttatttaatgataggacc 3440877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 580
Target Start/End: Original strand, 38283714 - 38283824
Alignment:
Q  469 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactcatttaatgata 568  Q
    |||||||  ||||||| | || || ||||||  |||||||||||||| | ||| ||||| ||  ||||||||||||||| || ||||| |||||||||||    
T  38283714 atcctctccatttaaatttttatctatttctaccatttagagagatatagacacaaattctta-aaaataattaatgatagtcagacttatttaatgata 38283812  T
Q  569 ggacccatcacc 580  Q
     |||||| ||||    
T  38283813 tgacccaccacc 38283824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 530 - 580
Target Start/End: Complemental strand, 9125004 - 9124954
Alignment:
Q  530 ttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 580  Q
    |||||||||||||||||| |||||||| ||||||| |||||| ||| ||||    
T  9125004 ttgaaaataattaatgattgtgagacttatttaattataggatccaccacc 9124954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 5598 - 5657
Alignment:
Q  380 ttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaacaaac 439  Q
    |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||| ||||    
T  5598 ttgggatgtttccggcgttccttgatgtccaacctacttcttgccttataaaaaaaaaac 5657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 24413360 - 24413315
Alignment:
Q  530 ttgaaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    
T  24413360 ttgaaaataattaatgatggtgggacccatttaatgataggaccca 24413315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 45396998 - 45396934
Alignment:
Q  363 gttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||||| || |||| ||||    
T  45396998 gttgggtgccaacctagttgggatatttctggc-ctccttgatgcctaacctatttcttgctttat 45396934  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 533 - 575
Target Start/End: Original strand, 26768895 - 26768937
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  26768895 aaaataattaatgatggtgagactcacttaatgatagaaccca 26768937  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 469 - 551
Target Start/End: Original strand, 42720586 - 42720668
Alignment:
Q  469 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtg 551  Q
    |||||||| ||||||||| ||||| |||||||  ||||||||||||||| ||| ||| |  ||||||||| ||||| ||||||    
T  42720586 atcctcttcatttaaacttttctctatttcttctatttagagagataaagacaaaaaatacttgaaaatagttaataatggtg 42720668  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 10759001 - 10758937
Alignment:
Q  361 cagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgcctt 426  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||| ||  ||||||| |||||||    
T  10759001 cagtggggtgccaacctagttgggatgtctctgg-gctccttgatgcctcccctacttcttgcctt 10758937  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 578
Target Start/End: Complemental strand, 49944044 - 49943999
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggacccatca 578  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||    
T  49944044 aaaataattaatgatggtaggactcatttaataataggacccatca 49943999  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 15736157 - 15736218
Alignment:
Q  366 gggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttat 428  Q
    ||||||||||||| ||| ||||| ||||| |||||||||||||| | |||||| |||||||||    
T  15736157 gggtgccaacctaattgagatgtctctgg-gctccttgatgtctcatctacttcttgccttat 15736218  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 478 - 547
Target Start/End: Original strand, 22536737 - 22536807
Alignment:
Q  478 atttaaactattctccatttctttcatttagagagataaaaacata-aattttttgaaaataattaatgat 547  Q
    ||||||| | ||||||||||||| |||||| ||||||||| | | | | ||||||||||||||||||||||    
T  22536737 atttaaagtcttctccatttcttccatttaaagagataaagagacatatttttttgaaaataattaatgat 22536807  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 487 - 517
Target Start/End: Complemental strand, 42720889 - 42720859
Alignment:
Q  487 attctccatttctttcatttagagagataaa 517  Q
    |||||||||||||||||||||||||||||||    
T  42720889 attctccatttctttcatttagagagataaa 42720859  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 32887858 - 32887817
Alignment:
Q  530 ttgaaaataattaatgatggtgagactcatttaatgatagga 571  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  32887858 ttgaaaataattaatgatggtgggacccatttaatggtagga 32887817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 36700961 - 36700860
Alignment:
Q  469 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaatt-ttttgaaaataattaatgatggtgagactcatttaatgat 567  Q
    |||||||  |||||| || ||||| |||||||| |||| |||||||| | ||| |||   ||||||||||||||||||||||||| |   ||||||||||    
T  36700961 atcctctccatttaacctcttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgat 36700862  T
Q  568 ag 569  Q
    ||    
T  36700861 ag 36700860  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 36717065 - 36716964
Alignment:
Q  469 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaatt-ttttgaaaataattaatgatggtgagactcatttaatgat 567  Q
    |||||||  |||||| || ||||| |||||||| |||| |||||||| | ||| |||   ||||||||||||||||||||||||| |   ||||||||||    
T  36717065 atcctctccatttaacctcttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgat 36716966  T
Q  568 ag 569  Q
    ||    
T  36716965 ag 36716964  T

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Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 569
Target Start/End: Original strand, 16839 - 16882
Alignment:
Q  526 ttttttgaaaataattaatgatggtgagactcatttaatgatag 569  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  16839 ttttttaaaaataattaatgatagtgagactcatttaatgatag 16882  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 10177855 - 10177914
Alignment:
Q  7 acagtgccacaacagaagttccatttactccctatctgacgaaggcacaaaagaaaaaag 66  Q
    |||||||| ||  ||| |||||| | ||||||||| ||||||||||||||||||||||||    
T  10177855 acagtgcctcagtagatgttccactcactccctatttgacgaaggcacaaaagaaaaaag 10177914  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 4404294 - 4404332
Alignment:
Q  537 taattaatgatggtgagactcatttaatgataggaccca 575  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  4404294 taattaatgatggtgagacacacttaatgataggaccca 4404332  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 533 - 575
Target Start/End: Original strand, 17080813 - 17080855
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggaccca 575  Q
    |||||||||||||||||||||||||| | |||| |||||||||    
T  17080813 aaaataattaatgatggtgagactcactcaatggtaggaccca 17080855  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 574
Target Start/End: Original strand, 42010117 - 42010158
Alignment:
Q  533 aaaataattaatgatggtgagactcatttaatgataggaccc 574  Q
    ||||||||||||||||||| ||| |||||| |||||||||||    
T  42010117 aaaataattaatgatggtgggacccatttagtgataggaccc 42010158  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 122774 - 122702
Alignment:
Q  361 cagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttgccttataaaaaa 434  Q
    |||| ||||||||||||||||||||||| ||| |  || |||||| |||||||| ||| ||||||||| |||||    
T  122774 cagtagggtgccaacctagttgggatgtctct-gaacttcttgatttctaaccttcttcttgccttatcaaaaa 122702  T

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