View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198-Insertion-3 (Length: 790)
Name: NF5198-Insertion-3
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 8 - 635
Target Start/End: Original strand, 36953150 - 36953770
Alignment:
| Q |
8 |
gttggaaagtggggaaagaataatagagaaagatcataaaatcattgttgggtaaggattttgggtgaatgatttagctaagtgaatcaactagatttat |
107 |
Q |
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| T |
36953150 |
gttggaaagtgggaaaagaataatagagaaagatcataaaatcattgttgggtaaggattttgggtgaatgatttagctaagtgaatcaactagatttat |
36953249 |
T |
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| Q |
108 |
ctatgcatgcataaacttttttcttcttcttggaagctggtaagttaatacgatgaaataagtccaatgttccattttgaatgataatttgcaagagttt |
207 |
Q |
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| T |
36953250 |
ctatgcatgcataaactttttt-ttcttcttggaagctggtaagttaatacaatgaaataagtccaatgttccattttgaatgataatttgcaagagttt |
36953348 |
T |
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| Q |
208 |
tgctaatacaaactattaaagatcatgtgcaagattctagagatgtagggttaatcgtgtgtcattactgaaatacttttcttagaacagatacatag-- |
305 |
Q |
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| T |
36953349 |
tgctaatacaaactattaaagatcatgtgcaagattctagagatgtagggttaatcgtgtgtcatt-----------tttcttagaacagatacatagat |
36953437 |
T |
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| Q |
306 |
--aagatagacatatgaactttctcttaagagataaagtaaagtaagatagaataaacaacagaaaataaataattgcctagccaggcatgttgtattac |
403 |
Q |
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| T |
36953438 |
agaagatagacatatgaactttctcttaagagataaagtaaagtaatatagaataaacaacagaaaatacataattgcctagccaggcatgttgtattac |
36953537 |
T |
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| Q |
404 |
aacaaagaataattttgctattgtatttccactttttccagaaaatcacttattgaatcggcgcaagcctatcaaaaa-atggttcaatgcctggttaca |
502 |
Q |
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| T |
36953538 |
aacaaagaatcattttgctattgtatttccactttttccagaaaatcacttattgaatcggcacaagcctatcaaaaatatggttcaatgcctggttaca |
36953637 |
T |
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| Q |
503 |
gttcaaaaaacccttaaatcctaacacaatcctacccaaccatgacattggagaaacattcttaattgaatctctaaatacatatatgcactaaaatgta |
602 |
Q |
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| T |
36953638 |
gttcaaaaaacccttaaatcctaacacaatcctacccaaccatgacattggagaaacattcttaattgaatctctaaatacatatatgcactaaaatgta |
36953737 |
T |
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| Q |
603 |
tgacaagtagactagtgaagcttttgctcactc |
635 |
Q |
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| T |
36953738 |
tgacaagtagactagtgaagcttttgctcactc |
36953770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 700 - 790
Target Start/End: Original strand, 36953835 - 36953925
Alignment:
| Q |
700 |
cacacccacagtagctggccattatctccagcgagatcttcatattcaatatttttaagatcgttgagatttccatcaatctgtgaatctg |
790 |
Q |
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| T |
36953835 |
cacacccatagtagctggccattatctccagcgagatcttcatattcaatatttttaagatcgttgagatttccatcaatctgtgaatctg |
36953925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 36949393 - 36949464
Alignment:
| Q |
183 |
tttgaatgataatttgcaagagttttgctaatacaaactattaaagatcatgtgcaagattctagagatgtaggg |
257 |
Q |
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| T |
36949393 |
tttgaatggtaatttgcaagggttttactaatacaaac---taaacatcatacgcaagattctagagatgcaggg |
36949464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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