View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198-Insertion-4 (Length: 654)
Name: NF5198-Insertion-4
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 289 - 578
Target Start/End: Complemental strand, 9132641 - 9132352
Alignment:
| Q |
289 |
gattctcttggaaaattattgattgatggaatcttgtcatccacagaatcttttgaggcgtgaggcatgagacactgaagctgccaactaactacagatc |
388 |
Q |
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| T |
9132641 |
gattctctttgaaatttattgattgattgaatcttgtcatctgcagaatcttttgaggcgtgaggcatgagacactgaagctgccaactaactacagatc |
9132542 |
T |
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| Q |
389 |
aaacttctatgctctttctagtgaggaaaagtaatgtttactactaggataaagttgttttatctgttctacttttactcatatatcagtagaatgttca |
488 |
Q |
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| T |
9132541 |
aaacttctatgctctttctagtgaggaaaagtaacgtttactactaggataaagttgtttaatctgttctacttttactcatatatcagtagaatgttta |
9132442 |
T |
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| Q |
489 |
ttccaacagtactttctttagttttgtagttgtttgaattgctttgttttccagaaaatcaaagacaatagtacctctatcagtgtgtgt |
578 |
Q |
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| T |
9132441 |
ttccaacagtactttctttagttttgtagttgtttgaattgctttgttttccagaaaatcaaagacaatagtacctctatcagtgtgtgt |
9132352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 184 - 354
Target Start/End: Complemental strand, 9126681 - 9126510
Alignment:
| Q |
184 |
agagattaaattggtgattcatctatatgattttccttgtcaaaagtgctcaaactttggtgtagaagttaataattgcgccataatgtacattttataa |
283 |
Q |
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| T |
9126681 |
agagactaaattggtgattcatctatatcattttctttgtcaaaattgttcaacctttggtttagaagttaataattgcgccataatgtacattttataa |
9126582 |
T |
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| Q |
284 |
ccaatgattctcttg-gaaaattattgattgatggaatcttgtcatccacagaatcttttgaggcgtgaggc |
354 |
Q |
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| T |
9126581 |
ccaatggttctcttgaaaaaattattgattgattgaatcttgtcatccgcagaatcttttgaggcgtgaggc |
9126510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 571
Target Start/End: Complemental strand, 9126369 - 9126267
Alignment:
| Q |
472 |
tatcagtagaatgttc---attccaacagtactttctttagttttgtagttgtttgaattgctttgttttccagaaaatcaaagacaatagtacctctat |
568 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||| | |||||| ||| ||||| | | ||||||||||||| |
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| T |
9126369 |
tatcagtagaatgttggttattacaacagtactttctttagttttgtaattgtttaaattgcatcgttttctagataatcatataacatagtacctctat |
9126270 |
T |
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| Q |
569 |
cag |
571 |
Q |
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||| |
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| T |
9126269 |
cag |
9126267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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