View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198-Insertion-6 (Length: 509)
Name: NF5198-Insertion-6
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 10762478 - 10762173
Alignment:
| Q |
8 |
acttttaccatatctcaaactatgtagtgtaactcaagtacctaagtatgcactctctttgttcttcaacaaattgtctcatcagaactttacaaaagtc |
107 |
Q |
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| T |
10762478 |
acttttaccatatctcaaactatgtagtgtaactcaagtacctaagtatgcactctctttgttcttgaacaaattgtctcatcagaactttacaaaagtc |
10762379 |
T |
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| Q |
108 |
ttaagactttgtaaactagttgagagtaaaagtaataaaatttttgaatctagattcctccgagagtatcttcttttgtgccaatcagttcccagtttaa |
207 |
Q |
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| T |
10762378 |
ttaagactttgtaaactagttgagagtaaaagtaataaaatttttgaatctagattcctccatgagtatcttcttttgtgccaatcagttaccagtttaa |
10762279 |
T |
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| Q |
208 |
taccttttgatacccttggtgcagataggtatttgagaataaacagtttccttctaattgattatatgcattagttttaaagatatatcagtatggttca |
307 |
Q |
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| T |
10762278 |
taccttttgatacccttggtgcagataggtatttgagaataaacagtttccttctaagtgattatatgcatttgttttaaagatatatcagtatggttca |
10762179 |
T |
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| Q |
308 |
gaaaga |
313 |
Q |
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|||||| |
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| T |
10762178 |
gaaaga |
10762173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 10762125 - 10761950
Alignment:
| Q |
328 |
tttcaaaaatttaatactttgtaacatgtataacaacaacaaaaaatagagaatcac--tattttaattgaatacatgttgctttttaagtttaaataat |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10762125 |
tttcaaaaatttaatactttgtaacatgtataacaacaacaaaaaatagagaatcacactattttaattgaatacatgttgctttttaagtttaaataat |
10762026 |
T |
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| Q |
426 |
aacactaaacctactaattgataatgtaattacactatatacaaaatcacaaaccatctaggtcatctacaaagttacatccat |
509 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
10762025 |
aacactaaacctactagttgataatgtaattacactatata--------caaatcatctaggtcatctacaaagttacatccat |
10761950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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