View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5198-Insertion-7 (Length: 389)

Name: NF5198-Insertion-7
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5198-Insertion-7
NF5198-Insertion-7
[»] chr1 (1 HSPs)
chr1 (9-375)||(38768058-38768423)
[»] chr7 (1 HSPs)
chr7 (9-236)||(44995964-44996190)
[»] chr4 (1 HSPs)
chr4 (326-375)||(47774091-47774140)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 38768058 - 38768423
Alignment:
Q  9 ctcttacatttccagatgaaatgtgcatgctaggcaatgttggtgttgtaactgtattcaatgaattgcggctggaggaagttccagacatgggttacaa 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38768058 ctcttacatttccagatgaaatgtgcatgctaggtaatgttggtgttgtaactgtattcaatgaattgcggctggaggaagttccagacatgggttacaa 38768157  T
Q  109 tcctcttggaactcctccatgtgggggagatatgtgtcagaggcaaaagtgttttcactggttaccataaaaatcctgagttaacaaaagaagccataat 208  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38768158 tcctcttggaactccgccatgtggag-agatatgtgtcagaggcaaaagtgttttcactggttaccataagaatcctgagttaacaaaagaagccataat 38768256  T
Q  209 agatggatggtttcacacaggttgaattctcttcttctacctcaaaatatttctattattttagcaaatcttgccacgttctaatgtgannnnnnnnnnn 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  38768257 agatggatggtttcacacaggttgaattctcttcttctacctcaaaatatttctattattttagcaaatcttgccacgttctaatgtgatttattttttt 38768356  T
Q  309 naatgacaaatattagcatgttagtattttctcctgtacgaggattcaaacccttgacctttaactc 375  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38768357 taatgacaaatattagcatgttagtattttctcccgtacgaggattcaaacccttgacctttaactc 38768423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 44996190 - 44995964
Alignment:
Q  9 ctcttacatttccagatgaaatgtgcatgctaggcaatgttggtgttgtaactgtattcaatgaattgcggctggaggaagttccagacatgggttacaa 108  Q
    ||||| ||||||| ||||||||||||||||| || |  ||||||  |||| || ||| ||| ||| | |  || || ||||||||||| |||||||||||    
T  44996190 ctcttgcatttcctgatgaaatgtgcatgcttggtaccgttggtcctgtatctatatacaacgaaatacaactagaagaagttccagagatgggttacaa 44996091  T
Q  109 tcctcttggaactcctccatgtgggggagatatgtgtcagaggcaaaagtgttttcactggttaccataaaaatcctgagttaacaaaagaagccataat 208  Q
    ||||||||||| |||| ||||||| | |||||||| | ||||| |||   |||||| |||| ||||| ||||| |||||||||||||| ||| ||||| |    
T  44996090 tcctcttggaaatccttcatgtggtg-agatatgtcttagagggaaatcagttttctctggctaccacaaaaaccctgagttaacaaaggaatccatagt 44995992  T
Q  209 agatggatggtttcacacaggttgaatt 236  Q
    ||||||||||||||||||||||||||||    
T  44995991 agatggatggtttcacacaggttgaatt 44995964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 47774091 - 47774140
Alignment:
Q  326 atgttagtattttctcctgtacgaggattcaaacccttgacctttaactc 375  Q
    |||||||||||||||||  | | |||||||||||||| ||||||||||||    
T  47774091 atgttagtattttctcccttgccaggattcaaaccctggacctttaactc 47774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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