View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198_high_1 (Length: 530)
Name: NF5198_high_1
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 248 - 521
Target Start/End: Complemental strand, 479627 - 479354
Alignment:
| Q |
248 |
gcaatgaaagagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct |
347 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479627 |
gcaatgaaatagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct |
479528 |
T |
|
| Q |
348 |
gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcc |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479527 |
gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcc |
479428 |
T |
|
| Q |
448 |
catctttgctttccaaattacacacgatgcttatgctgtgtgaagagaataagaaatttattatatatattctt |
521 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
479427 |
catctttgctttccaaattatacacgatgcttatgttgtgtgaagagaagaagaaatttattatatatattctt |
479354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 479857 - 479689
Alignment:
| Q |
18 |
atatagagccatgataacacaaatcaatctcacgtacatgagtgtaaatatgcgtttatattattattactagagaatggaaactaacccaattagtgag |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479857 |
atatagagccatgataacacaaatcaatctcaggtacatgagtgtaaatatgcgtttatattattattactagagaatggaaactaacccaattagtgag |
479758 |
T |
|
| Q |
118 |
gttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaac |
186 |
Q |
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| T |
479757 |
gttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaac |
479689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 262 - 464
Target Start/End: Complemental strand, 474139 - 473937
Alignment:
| Q |
262 |
gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaatt |
361 |
Q |
| |
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|||||| || |||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||| | || |||| ||||| ||||| | | |
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| T |
474139 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
474040 |
T |
|
| Q |
362 |
cttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttcc |
461 |
Q |
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||| |||||| | || ||||||||||||||||| |||||| |||||| |||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
474039 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttcc |
473940 |
T |
|
| Q |
462 |
aaa |
464 |
Q |
| |
|
||| |
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|
| T |
473939 |
aaa |
473937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 263 - 437
Target Start/End: Complemental strand, 466672 - 466498
Alignment:
| Q |
263 |
tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattc |
362 |
Q |
| |
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||||| || |||||||| | |||||||||| ||||||||||| |||| |||||| |||||||||||||| || |||| ||||| ||||| | | |||| |
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| T |
466672 |
taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc |
466573 |
T |
|
| Q |
363 |
ttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
437 |
Q |
| |
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||||||||| | | ||||||| |||| |||| |||||||| |||| | |||||||| |||||||||||||||| |
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| T |
466572 |
ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgt |
466498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 466835 - 466743
Alignment:
| Q |
89 |
agagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa |
181 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||||||||| |||||||| |||||||| |||||||| |||| |
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| T |
466835 |
agagaatggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctcctgtcaa |
466743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 380 - 464
Target Start/End: Complemental strand, 454850 - 454763
Alignment:
| Q |
380 |
cctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaac---atcccatctttgctttccaaa |
464 |
Q |
| |
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|||| ||||||||||| | |||||||||| |||| || |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
454850 |
cctgaatatataaactgtgtcaacaccatggccaatactggaaggtagtactccatgtctaaacaatatcccatctttactttccaaa |
454763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 368
Target Start/End: Complemental strand, 445863 - 445767
Alignment:
| Q |
272 |
aaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgc |
368 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||| |||||||| |||||||| | ||||||| ||||| ||||| | |||||||||||| |
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| T |
445863 |
aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgtgc |
445767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 454956 - 454890
Alignment:
| Q |
263 |
tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaata |
329 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||| |
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|
| T |
454956 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaata |
454890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 455121 - 455041
Alignment:
| Q |
96 |
ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcct |
176 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| | | | |||||||| ||||||||||||||||||||| ||| |||||||| |
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| T |
455121 |
ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcct |
455041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 474276 - 474232
Alignment:
| Q |
133 |
gaaaaactccttaaatttaaggaataagagccagaatttctccta |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
474276 |
gaaaaactccttaaatttaaggaataagaggcagagtttctccta |
474232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 446108 - 446009
Alignment:
| Q |
82 |
tattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa |
181 |
Q |
| |
|
|||||||||| |||| |||| |||| ||||||||| || | ||||| | | |||||||||||||| |||||||| || ||| |||| |||||||| |||| |
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| T |
446108 |
tattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaa |
446009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 437
Target Start/End: Original strand, 27493754 - 27493931
Alignment:
| Q |
260 |
aagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaa |
359 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| ||||||||||| ||||| || || |||||||||| | | || |||||||||| ||||| ||||| |
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| T |
27493754 |
aagtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaa |
27493853 |
T |
|
| Q |
360 |
ttcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
437 |
Q |
| |
|
||||||| |||| | ||| |||| |||||| |||| |||||| | |||| |||||||||| | |||||||||||||| |
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|
| T |
27493854 |
ttcttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
27493931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 27493536 - 27493624
Alignment:
| Q |
91 |
agaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaat---aagagccagaatttctcct |
176 |
Q |
| |
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||||| ||||| ||||||| |||||| || | ||||| | ||||||||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
27493536 |
agaatagaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaatgggaggagccagaatttctcct |
27493624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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