View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198_high_2 (Length: 509)
Name: NF5198_high_2
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198_high_2 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 6 - 509
Target Start/End: Original strand, 17158869 - 17159371
Alignment:
| Q |
6 |
actgagaagaaacaactgctgaagtagaagtaacagccggccccatgcgtgagctagcaatagtacggaccggaatagcctgagaagacagagccagtgt |
105 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17158869 |
actgagaagtaacaactgctgaagtagaagtaacaaccggccccatgtgtgagctagcaatagtacggaccggaatagcctgagaagacagagccagtgt |
17158968 |
T |
|
| Q |
106 |
tgaaggggtagtagcaaccggaactctctgagaagtggtgactgtcgaagtaatcggaactggaacccaagtcgaggtactgccattggccaaagttgaa |
205 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17158969 |
tgaaggggtagtagtaaccagaactctctgaaaagtggtgactgttgaagtaatcggaaccggaacccaagtcgaggtactgccattggccaaagttgaa |
17159068 |
T |
|
| Q |
206 |
gccccccatatatgcgtgctgccgatccaatatttgacatttatgtatgttttttaatagattattataaacatttgtgtagtggattagtgaatttcat |
305 |
Q |
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| T |
17159069 |
gcccccc--atatgtgtgctgccgatccaatatttgacatttatgtatggtttttaatagattattataaacatttgtgtagtggattagtgaatttcat |
17159166 |
T |
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| Q |
306 |
cgttaataatgatttattaaacatagtaagtcatctcattgttactcatcgagtaagtatatccccccacc-aattgaatagccattaaaatacaaacca |
404 |
Q |
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| T |
17159167 |
cgttaataatgagttattaaacatagtaagtcatctcattgttactcatcgagtaactatatccccccaccaaattgaatagccattaaaatacaaacca |
17159266 |
T |
|
| Q |
405 |
ataaaccttttgcataaggttatattagatttaaataaggttatatgtcaagcttaagatgaaagtaatatattagatttgtcactcaaaacaaggaaaa |
504 |
Q |
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| T |
17159267 |
ataaaccttttgcataaggttatattagatttaaataaggttatatgtcaagcttaagatgaaagtaatatattagatttttcactcaaaacaaggagaa |
17159366 |
T |
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| Q |
505 |
agggc |
509 |
Q |
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||||| |
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| T |
17159367 |
agggc |
17159371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 230 - 507
Target Start/End: Complemental strand, 17154214 - 17153943
Alignment:
| Q |
230 |
atccaatatttgacatttatgtatgttttttaatagattattataaacatttgtgtagtggattagtgaatttcatcgttaataatgatttattaaacat |
329 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
17154214 |
atccaatatttgacatttatgtatgtttcttaatagattattataaatatttgtgtagtggattagtgaatttcattgttaataatgagttattaaacat |
17154115 |
T |
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| Q |
330 |
agtaagtcatctcattgttactcatcgagtaagtatatccccccaccaattgaatagccattaaaatacaaaccaataaaccttttgcataaggttatat |
429 |
Q |
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||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17154114 |
agtaagtcatctcattgttactcctccagtaaatatatccc-------attgaatagccattaacatacaaaccaataaaccttttgcataaggttatat |
17154022 |
T |
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| Q |
430 |
tagatttaaataaggttatatgtcaagcttaagatgaaagt-aatatattagatttgtcactcaaaacaaggaaaaagg |
507 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||||| |
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| T |
17154021 |
tagatttaaataaggttatatgtcaagcataagatgaaagtaaatatataagatttttcactcaaaacaaggaaaaagg |
17153943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 11780452 - 11780656
Alignment:
| Q |
8 |
tgagaagaaacaactgctgaagtagaagtaacagccggccccatgcgtgagctagcaatagtacggaccggaatagcctgagaagacagagccagtgttg |
107 |
Q |
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||||||| ||||||||||||||||||| ||||| ||| ||||||| |||||||||||||| || || |||||||||||||||||| | |||| ||||||| |
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| T |
11780452 |
tgagaagtaacaactgctgaagtagaattaacaaccgaccccatgtgtgagctagcaataatagggtccggaatagcctgagaaggcggagctagtgttg |
11780551 |
T |
|
| Q |
108 |
aaggggtagtagcaaccggaactctctgagaagtggtgactgtcgaagtaatcggaactggaacccaagtcgaggtactgccattggccaaagttgaagc |
207 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||| ||||||||| |||| ||||| |
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| T |
11780552 |
aaggggcagtagtaaccggaactctctgagaagtggtgactgtcgaagtaatcggaaccggaacctaagtccaagtacttccattggccgaagtggaagc |
11780651 |
T |
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| Q |
208 |
ccccc |
212 |
Q |
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||||| |
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| T |
11780652 |
ccccc |
11780656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 12101673 - 12101540
Alignment:
| Q |
75 |
ccggaatagcctgagaagacagagccagtgttgaaggggtagtagcaaccggaactctctgagaagtggtgactgtcgaagtaatcggaactggaaccca |
174 |
Q |
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||||||||||| |||||| | |||||||||||||||||| || || ||| |||||||||||| |||||||||| ||||||||||| ||| |||||||| |
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| T |
12101673 |
ccggaatagccagagaaggctgagccagtgttgaaggggcagaagtgaccagaactctctgagtagtggtgactatcgaagtaatcagaatcggaaccca |
12101574 |
T |
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| Q |
175 |
agtcgaggtactgccattggccaaagttgaagcc |
208 |
Q |
| |
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|||| |||||||||||||||| |||| |||||| |
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| T |
12101573 |
agtccaggtactgccattggctgaagtggaagcc |
12101540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 14977388 - 14977301
Alignment:
| Q |
125 |
ggaactctctgagaagtggtgactgtcgaagtaatcggaactggaacccaagtcgaggtactgccattggccaaagttgaagcccccc |
212 |
Q |
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| T |
14977388 |
ggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtggaagctcccc |
14977301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 16680 - 16729
Alignment:
| Q |
266 |
attattataaacatttgtgtagtggattagtgaatttcatcgttaataat |
315 |
Q |
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||||||||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
16680 |
attattataaacacctctgtagtagattagtgaatttcatcgttaataat |
16729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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