View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5198_low_10 (Length: 224)

Name: NF5198_low_10
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5198_low_10
NF5198_low_10
[»] chr3 (3 HSPs)
chr3 (13-224)||(42197761-42197972)
chr3 (13-224)||(42222563-42222774)
chr3 (13-224)||(42210338-42210549)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 42197972 - 42197761
Alignment:
Q  13 attaggcttgctacaaacaatttctcagatgcaaacttggttggaaaaggagggtttggctctgtttacaagggtgtgtttaacatcagcacttatgaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42197972 attaggcttgctacaaacaatttctcagatgcaaacttggttggaaaaggagggtttggctctgtttacaagggtgtgcttaacatcagcacttatgaaa 42197873  T
Q  113 gtcaaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatatgaagctttgaaaaatgttaggca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42197872 gtcaaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatgtgaagctttgaaaaatgttaggca 42197773  T
Q  213 tcggaatctggt 224  Q
    ||||||||||||    
T  42197772 tcggaatctggt 42197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 42222774 - 42222563
Alignment:
Q  13 attaggcttgctacaaacaatttctcagatgcaaacttggttggaaaaggagggtttggctctgtttacaagggtgtgtttaacatcagcacttatgaaa 112  Q
    |||| ||||||||||||||| || |||| | |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||| |||||    
T  42222774 attaagcttgctacaaacaacttttcagctacaaacttggttggaaaaggagggtttggatctgtttacaaaggtgtgttcaacataagcacttttgaaa 42222675  T
Q  113 gtcaaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatatgaagctttgaaaaatgttaggca 212  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  42222674 gtcaaacaactacacttgctgttaaagttcttgacctgcaacaaagcaaagcctctcagagttttagtgcagaatgtgaagctttgaaaaatgttaggca 42222575  T
Q  213 tcggaatctggt 224  Q
    ||||||||||||    
T  42222574 tcggaatctggt 42222563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 42210549 - 42210338
Alignment:
Q  13 attaggcttgctacaaacaatttctcagatgcaaacttggttggaaaaggagggtttggctctgtttacaagggtgtgtttaacatcagcacttatgaaa 112  Q
    |||||||||||||| |||||||| |||| ||||||  |||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||    
T  42210549 attaggcttgctacgaacaatttttcagctgcaaatatggttggaaaaggaggctttggatctgtttacaagggtgtgttcaacatcagcagttatgaaa 42210450  T
Q  113 gtcaaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatatgaagctttgaaaaatgttaggca 212  Q
     |||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  42210449 atcaaaccaccacacttgctgttaaagttcttgacctgcaacaaagcaaagcctctcagagttttagtgcagaatgtgaagctttgaaaaatgttaggca 42210350  T
Q  213 tcggaatctggt 224  Q
    ||||||||||||    
T  42210349 tcggaatctggt 42210338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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