View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198_low_4 (Length: 368)
Name: NF5198_low_4
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 5810731 - 5811071
Alignment:
| Q |
16 |
gatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcg |
115 |
Q |
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| T |
5810731 |
gatccttcggtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcg |
5810830 |
T |
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| Q |
116 |
gcataataatatgcatattaatagttaannnnnnnn-cttcaaaattttggaattttttctcatattcacccacgtatttattgtgttctatgaccattt |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810831 |
gcataataatatgcatattaatagttaatttttttttcttcaaaattttggaatttt-tctcatattcacccacgtatttattgtgttctatgaccattt |
5810929 |
T |
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| Q |
215 |
tctaaattaatatgaacaagaaaaaattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactcctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810930 |
tctaaattaatatgaacaagaaaaaattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactcctt |
5811029 |
T |
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| Q |
315 |
gcttgatggatcactgttttttcgtcctaaaaatgttagaat |
356 |
Q |
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| T |
5811030 |
gcttgatggatcactgttttttcgtcctaaaaatgttagaat |
5811071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 27736064 - 27736168
Alignment:
| Q |
16 |
gatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcg |
115 |
Q |
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| T |
27736064 |
gatccttcattgagaacttccaacttcacttcagatggagatggataataattagggatgttgaaagtattgattttctcttcgttaatgattccctgca |
27736163 |
T |
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| Q |
116 |
gcata |
120 |
Q |
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||||| |
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| T |
27736164 |
gcata |
27736168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 27736240 - 27736313
Alignment:
| Q |
252 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggat |
325 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggat |
27736313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 32703480 - 32703566
Alignment:
| Q |
240 |
attatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatc |
326 |
Q |
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| T |
32703480 |
attatcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatc |
32703566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 325
Target Start/End: Original strand, 32627333 - 32627415
Alignment:
| Q |
243 |
atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggat |
325 |
Q |
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| T |
32627333 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggat |
32627415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 32627035 - 32627116
Alignment:
| Q |
16 |
gatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctctt |
97 |
Q |
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||||||||||| | ||||||||| | || |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
32627035 |
gatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctctt |
32627116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 32708923 - 32708988
Alignment:
| Q |
252 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgct |
317 |
Q |
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||||||||| ||||||||||||||||| |||||||| |||||||||||||| | | |||||||||| |
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| T |
32708923 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
32708988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 7297163 - 7297212
Alignment:
| Q |
16 |
gatccttcagtgagaacttccaactcaacctcagatggagatggataata |
65 |
Q |
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||||||||| |||||||||| |||||||| ||| |||| ||||||||||| |
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| T |
7297163 |
gatccttcattgagaacttctaactcaacttcatatggtgatggataata |
7297212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 21941900 - 21941968
Alignment:
| Q |
46 |
tcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgc |
114 |
Q |
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| T |
21941900 |
tcagatggagatggaaaatagataggaatgttgaaagtattgagtttctcttcttctatgattccctgc |
21941968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 20117977 - 20117882
Alignment:
| Q |
19 |
ccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgc |
114 |
Q |
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| T |
20117977 |
ccttcagttagaacttccaatttcacttcagttggagatggataatagttagggagattgaaagtattgagggtctcttcttctatgattccctgc |
20117882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 21943082 - 21943132
Alignment:
| Q |
247 |
tagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaa |
297 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
21943082 |
tagtctacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
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