View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198_low_5 (Length: 357)
Name: NF5198_low_5
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 34418331 - 34418652
Alignment:
| Q |
19 |
gttcctcaccaccgtaggaaacaactctgatgtgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaattta |
118 |
Q |
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| T |
34418331 |
gttcctcaccaccgtaggaaacaactctgatgtgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaattta |
34418430 |
T |
|
| Q |
119 |
attactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418431 |
attactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacc |
34418530 |
T |
|
| Q |
219 |
tatccaataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418531 |
tatccaataacactgcggttatcgtgaatgctggcatctctgcgactgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaa |
34418630 |
T |
|
| Q |
319 |
gctaagaccataatacaccacc |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34418631 |
gctaagaccataatacaccacc |
34418652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 34430581 - 34430884
Alignment:
| Q |
20 |
ttcctcaccaccgtaggaaacaactctgatgtgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaatttaa |
119 |
Q |
| |
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|||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||| || |||||||| |||||||| ||||| ||||| |||| ||||| |
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| T |
34430581 |
ttcctcaccaccgtaggaaataactccgtcgtgtaaatatacaacaaattataagtcccagccattccaaatatccccaaaactccacaaaccattttaa |
34430680 |
T |
|
| Q |
120 |
ttactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacct |
219 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
34430681 |
ttactttccacacccctacattactcatcaaactccccatcaaacaaaagaatccactaaaccacattgtccctattgtcaatggcttcctcccaaacct |
34430780 |
T |
|
| Q |
220 |
atccaataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaag |
319 |
Q |
| |
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|||||| ||||| || ||||||| || || ||||| ||||| |||||||| || ||||| |||||||||||||||||||||| |||||||| |||||| |
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| T |
34430781 |
atccaacaacaccgccgttatcgcaaacgccggcatttctgctaccgcattgaggagcacactcatgtagaggttggtttcgagatttgtaacatttaag |
34430880 |
T |
|
| Q |
320 |
ctaa |
323 |
Q |
| |
|
|||| |
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| T |
34430881 |
ctaa |
34430884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 31613288 - 31612969
Alignment:
| Q |
20 |
ttcctcaccaccgtaggaaacaactctgatgtgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaatttaa |
119 |
Q |
| |
|
||||| || ||||| || |||||||| | || |||||||| | ||| |||||||| || ||||| || ||||| || |||| |||||||||| ||| | |
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| T |
31613288 |
ttcctaacaaccgttgggaacaactccgccgtataaataaagagcaaattataagtccctgccatcccaaatattcccaaaattccacacaccattttca |
31613189 |
T |
|
| Q |
120 |
ttactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacct |
219 |
Q |
| |
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|| ||||||||||||| ||| | ||| |||||||||| ||||||||||||||||| ||||| | |||||||||||| ||||| ||||| |||||| | |
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| T |
31613188 |
ttcctttccacacccccttatttctcatcaaactccccacaaaacaaaagaatccactgaaccataatgtccctattgttaatggcttcctcccaaactt |
31613089 |
T |
|
| Q |
220 |
atccaataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaag |
319 |
Q |
| |
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|||||| || | ||| |||||| |||| ||||||||||| || || || || || | ||||| | ||| || || |||||||||||| ||||||| | |
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| T |
31613088 |
atccaacaagattgctgttatcatgaacgctggcatctccgccactgcgttgagtattacgttaaggtaaagatttgtttcgaggtttactacgtttagg |
31612989 |
T |
|
| Q |
320 |
ctaagaccataatacaccac |
339 |
Q |
| |
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|| |||||||| |||||||| |
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|
| T |
31612988 |
cttagaccatagtacaccac |
31612969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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