View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198_low_6 (Length: 329)
Name: NF5198_low_6
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 26786827 - 26787137
Alignment:
| Q |
1 |
tgacatgcttaggcagataaacactgcagctctcagcattggcacaatcaaaggttctcttattttcctccaaataaacgcaagttgcataccaactcct |
100 |
Q |
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| T |
26786827 |
tgacatgcttaggcagataaacactgcagctctcagcattggcacgatcaaaggttctcttattttcctccaaataaacgcaagttgcataccaactcct |
26786926 |
T |
|
| Q |
101 |
tcactagctacttgaaacacctccatatttttcttgaaagacaatgacccacttggttgaaatcaaagtcnnnnnnncatttatgaaaagaaaagagatg |
200 |
Q |
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| T |
26786927 |
tcactagctacttgaaacacctccatatttttcttgaaagacaatgacccacttggttgaaatcaaagtcaaaaaaacatttatgaaaagaaaagagatg |
26787026 |
T |
|
| Q |
201 |
tagaacagaccattgacagtgcaaagcaaataaagggttgaccaagaaacataacgagtgtgtgtttgcgtttgtgttttcctttttctaagaggtataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26787027 |
tagaacagaccattgacagtgcaaagcaaataaagggttgaccaagaaacataacgagtgtgtgtttgtgtttgtgttttcctttttctaagaggtataa |
26787126 |
T |
|
| Q |
301 |
aataattgtgc |
311 |
Q |
| |
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||||||||||| |
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| T |
26787127 |
aataattgtgc |
26787137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 26799633 - 26799728
Alignment:
| Q |
31 |
tctcagcattggcacaatcaaaggttctcttattttcctccaaataaacgcaagttgcataccaactccttcactagctacttgaaacacctccat |
126 |
Q |
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| T |
26799633 |
tctcaacattggcactatcaaaggttctctgatattcttccatatgaactcaagttgcataccaactccttcacttgctactttaaatgcctccat |
26799728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 26823725 - 26823825
Alignment:
| Q |
31 |
tctcagcattggcacaatcaaaggttctcttattttcctccaaataaacgcaagttgcataccaactccttcactagctacttgaaacacctccatattt |
130 |
Q |
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||||| ||||||||| |||||||||||||| || ||| |||| || ||| ||||||||||| ||||||||||||| ||||||| ||| ||||||| ||| |
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| T |
26823725 |
tctcaacattggcactatcaaaggttctctgatattcttccatatgaactcaagttgcataacaactccttcacttgctactttaaatgcctccattttt |
26823824 |
T |
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| Q |
131 |
t |
131 |
Q |
| |
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| |
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| T |
26823825 |
t |
26823825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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