View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5198_low_9 (Length: 227)
Name: NF5198_low_9
Description: NF5198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5198_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34418087 - 34418309
Alignment:
| Q |
1 |
atacataataactgtaaaaacagacaactatctagcaatagcatcatgcaagtccagcctccaatccattgaatgtatcataaagaggcatattcagtgt |
100 |
Q |
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| T |
34418087 |
atacataataactgtaaaaacagacaactatctagcaatagcatcatgcaagtccagcctccaatccattgaatgtatcataaagaggcatattcagtgt |
34418186 |
T |
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| Q |
101 |
ctccggcagataaaatgcaaacatcccacctaaaatgccgcataccgcaaatactccgaacggcaaccaactacctaaaacgaccacaaaaggcgccaaa |
200 |
Q |
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| T |
34418187 |
ctccggcagataaaatgcaaacatcccacctaaaatgccgcataccgcaaatactccgaacggcaaccaactacctaaaacgaccacaaaaggcgccaaa |
34418286 |
T |
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| Q |
201 |
atcgcccccatttgcgcggcttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34418287 |
atcgcccccatttgcgcggcttg |
34418309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 34430375 - 34430547
Alignment:
| Q |
40 |
agcatcatgcaagtccagcctccaatccattgaatgtatcataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgcc |
139 |
Q |
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|||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | || |
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| T |
34430375 |
agcatcatgcaagtccagccatcaatcccttaaatgtatcataaagaggcatatttagtgtctccggcagataaaacgcaaacatcccacctattaatcc |
34430474 |
T |
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| Q |
140 |
gcataccgcaaatactccgaacggcaaccaactacctaaaacgaccacaaaaggcgccaaaatcgcccccatt |
212 |
Q |
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||| |||||||||| |||||||||||||||| |||||||||||||||||||||| | | |||||||||||| |
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| T |
34430475 |
gcacgccgcaaataccccgaacggcaaccaaccacctaaaacgaccacaaaaggcacagatatcgcccccatt |
34430547 |
T |
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