View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5199-Insertion-2 (Length: 793)
Name: NF5199-Insertion-2
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199-Insertion-2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 61 - 459
Target Start/End: Original strand, 7160494 - 7160892
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaa |
160 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7160494 |
ttgtaggaagtcccgtgcatgtaatggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaattttgcttaccaa |
7160593 |
T |
|
| Q |
161 |
tatttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcctaaaaatatcatgttgttctttaactaaggtgtgt |
260 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||| |
|
|
| T |
7160594 |
catttcagagaattggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcttatagatatcatgttgttctttaagtaaggtgtgt |
7160693 |
T |
|
| Q |
261 |
gaatcagtcggaaaattgaagcatttaagatatcttaatttgtggcgttgccgagatttgggaagcatttctaaatccataagtaattttatttgcctac |
360 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
7160694 |
gaatcaatcggaaaattgaagcatttaagatatcttaacttatggcgttgcagagatttgggaagcatttctaaatccgtaggtaattttgtttgcctac |
7160793 |
T |
|
| Q |
361 |
aaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattgattaatttgagatatgttgatgttaaatttttgaaag |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
7160794 |
aaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaatttgagatatcttgatgttaaatttttaaaag |
7160892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 465 - 789
Target Start/End: Original strand, 7160935 - 7161255
Alignment:
| Q |
465 |
gtgtgtggtggtggamtaagggtgttatttttgtaaactggttttctttgctaacaaatgttgttataaatcctctctacatcagtgtcgaggttttaca |
564 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||||||| |||||| ||| |
|
|
| T |
7160935 |
gtgtgtcgtggtggaataatggtgttatttttgtaaactggttttctttgctcacaaatattgtgataat--ctctctacatcagtgttaaggttt-aca |
7161031 |
T |
|
| Q |
565 |
acatctcccaccgttttgaacgtcttccattcttgaagtt-attcatttaaatttgcttgatgaattggagtatatgtattatgaaaagctcctttcgcc |
663 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | | |||||||| ||||| ||||||||||||| ||| |
|
|
| T |
7161032 |
atatctcccaccgttg-gaacgtcttccattcttgaagtttattcatttaaattcgctccttaa----gagtatatatattacgaaaagctccttttgcc |
7161126 |
T |
|
| Q |
664 |
tgaaatattctttccgtctttagagaggctccttttatgca-gtgcaaaa-gttgaggggatggtggaggatgggagatgatgtcaatgacaatgatact |
761 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
7161127 |
tgagatattctttccatctttagagaggctccttttgtgcaagtgcaaaaagttgaggggatggtggaggttgggagctgatgtcaatgacaatgatact |
7161226 |
T |
|
| Q |
762 |
gatgactcgtc-aaatctcataatctctc |
789 |
Q |
| |
|
||| ||||||| ||||| ||||||||||| |
|
|
| T |
7161227 |
gataactcgtcaaaatcacataatctctc |
7161255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 3918236 - 3918077
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaa |
160 |
Q |
| |
|
|||| |||| |||||||||||||| | || ||||||| |||||||||||||| || |||||| ||||||| ||| |||||||||| ||||| | |||| |
|
|
| T |
3918236 |
ttgtcggaaatcccgtgcatgtaatgttgcaaagtgaagctattggtttgttggagtcattgaatgcaagaaagatgcgaactttgattttgttgtccaa |
3918137 |
T |
|
| Q |
161 |
tatttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacg |
220 |
Q |
| |
|
| ||| |||| || ||| ||||||||| | | |||||| | |||||||||||||||||| |
|
|
| T |
3918136 |
caattcagagagtatgaatgagaaggaattgtttgttatatcaaaattcaaatacttacg |
3918077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 61 - 301
Target Start/End: Complemental strand, 3172902 - 3172662
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaa |
160 |
Q |
| |
|
||||||| ||||| ||| ||||| | |||||||||||| ||||||||||||| | || ||||||||| || | |||||||||| ||||| || |||| |
|
|
| T |
3172902 |
ttgtaggtagtccaatgcgtgtaatgttgaaaagtgatgatattggtttgttaaagtcggtggatgcaatcaggatgcgaactttgattttgttttccaa |
3172803 |
T |
|
| Q |
161 |
tatttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcctaaaaatatcatgttgttctttaactaa---ggtg |
257 |
Q |
| |
|
|| || ||||| | |||| || |||||| | ||| |||||| |||||||||||||||||||||| | || | || ||||||||||| ||| | | |
|
|
| T |
3172802 |
taattgggagacttggaatgaaaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttc |
3172706 |
T |
|
| Q |
258 |
tgtgaatcagtcggaaaattgaagcatttaagatatcttaattt |
301 |
Q |
| |
|
||||| ||| | |||||||||| ||||||||||||||||||||| |
|
|
| T |
3172705 |
tgtgattcaattggaaaattgaggcatttaagatatcttaattt |
3172662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 369
Target Start/End: Complemental strand, 3169195 - 3169022
Alignment:
| Q |
196 |
ttattttaaaattcaaatacttacgcgtcctaaaaatatcatgttgttctttaactaaggtgtgtgaatcagtcggaaaattgaagcatttaagatatct |
295 |
Q |
| |
|
|||||| |||||||||||| ||||||||| | || ||||| |||||||||| |||| ||||||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
3169195 |
ttatttcaaaattcaaatatttacgcgtcttgaagctatcacattgttctttatgtaagttgtgtgattcaattgtaaaattgaagcatttaagatatct |
3169096 |
T |
|
| Q |
296 |
taatttgtggcgttgccgagatttgggaagcatttctaaatccataagtaattttatttgcctacaaacactaa |
369 |
Q |
| |
|
| | || ||| ||| ||| ||||||| ||| ||||||||||| |||| | ||||| |||||||||||| |
|
|
| T |
3169095 |
tgacttatggtactgcagaggagtgggaagtgtttttaaatccataactaatatggtttgcttacaaacactaa |
3169022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 3141242 - 3141081
Alignment:
| Q |
63 |
gtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaata |
162 |
Q |
| |
|
|||||||||||| ||||| ||| | ||||||| |||||||||||||| || || |||||| | ||| |||| |||||||||| ||||| | || || |
|
|
| T |
3141242 |
gtaggaagtcccatgcatataatgttgaaaagggatgctattggtttcttggagtcattgagttcaaacaagatgcgaactttgattttgttgactgatt |
3141143 |
T |
|
| Q |
163 |
tttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtc |
224 |
Q |
| |
|
|||| || || ||| || |||||| ||| || |||| |||||||||||||||||||||| |
|
|
| T |
3141142 |
tttcagaaaagttgaatgaaaaggaattattagtcatttcaaaattcaaatacttacgcgtc |
3141081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 3169330 - 3169240
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttt |
151 |
Q |
| |
|
|||||| ||||||| ||||| ||| | |||||| |||| ||||||||||||||| || |||||||||||| | |||| ||||| ||||| |
|
|
| T |
3169330 |
ttgtagaaagtcccatgcatataatgatgaaaatggatgatattggtttgttagagtcggtggatgcaagcaggctgcgtactttgatttt |
3169240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University