View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5199-Insertion-4 (Length: 740)

Name: NF5199-Insertion-4
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5199-Insertion-4
NF5199-Insertion-4
[»] chr2 (17 HSPs)
chr2 (8-262)||(31845199-31845453)
chr2 (294-597)||(31845464-31845768)
chr2 (601-734)||(31845737-31845867)
chr2 (212-374)||(19945702-19945864)
chr2 (212-392)||(20142936-20143120)
chr2 (212-374)||(13716688-13716850)
chr2 (212-359)||(37714391-37714538)
chr2 (212-362)||(38320190-38320340)
chr2 (212-365)||(32976007-32976162)
chr2 (221-342)||(4434274-4434398)
chr2 (237-392)||(3167889-3168047)
chr2 (255-374)||(27007180-27007299)
chr2 (220-362)||(35457377-35457518)
chr2 (294-392)||(14131206-14131308)
chr2 (238-359)||(27407416-27407537)
chr2 (313-390)||(31264827-31264908)
chr2 (212-283)||(37899572-37899643)
[»] chr5 (10 HSPs)
chr5 (211-374)||(3040238-3040401)
chr5 (232-374)||(30700848-30700990)
chr5 (212-361)||(25493787-25493936)
chr5 (212-365)||(40519147-40519299)
chr5 (211-374)||(30735299-30735462)
chr5 (230-365)||(20359897-20360034)
chr5 (211-362)||(30071738-30071889)
chr5 (264-365)||(34280093-34280194)
chr5 (215-333)||(35875758-35875876)
chr5 (212-261)||(21259186-21259235)
[»] chr3 (11 HSPs)
chr3 (212-361)||(34905814-34905963)
chr3 (212-365)||(45852921-45853074)
chr3 (237-365)||(2671896-2672024)
chr3 (212-365)||(31192034-31192180)
chr3 (212-347)||(48897685-48897820)
chr3 (255-374)||(18271941-18272060)
chr3 (255-374)||(26442960-26443079)
chr3 (212-390)||(1632777-1632958)
chr3 (220-286)||(10593526-10593592)
chr3 (255-360)||(1713970-1714075)
chr3 (307-365)||(10593448-10593506)
[»] chr7 (12 HSPs)
chr7 (212-362)||(21882759-21882909)
chr7 (212-390)||(20125558-20125740)
chr7 (212-361)||(8123659-8123808)
chr7 (213-365)||(22631449-22631601)
chr7 (212-342)||(46297581-46297711)
chr7 (215-354)||(23730503-23730640)
chr7 (261-365)||(1985023-1985127)
chr7 (221-372)||(19511387-19511538)
chr7 (212-350)||(24250456-24250594)
chr7 (255-392)||(46413699-46413843)
chr7 (221-365)||(23611737-23611880)
chr7 (212-350)||(44600980-44601106)
[»] chr1 (15 HSPs)
chr1 (217-392)||(10061565-10061740)
chr1 (212-391)||(29657332-29657515)
chr1 (212-350)||(23906608-23906746)
chr1 (211-363)||(43537134-43537289)
chr1 (216-374)||(35412998-35413156)
chr1 (230-365)||(26469930-26470065)
chr1 (212-350)||(21540042-21540180)
chr1 (220-374)||(35149642-35149796)
chr1 (211-286)||(49313574-49313649)
chr1 (212-392)||(48852611-48852795)
chr1 (215-350)||(11469994-11470130)
chr1 (295-365)||(9113447-9113518)
chr1 (293-366)||(4684517-4684590)
chr1 (216-263)||(35360380-35360427)
chr1 (220-310)||(47996653-47996743)
[»] chr4 (14 HSPs)
chr4 (207-362)||(24060539-24060694)
chr4 (230-365)||(5288508-5288643)
chr4 (215-365)||(42504181-42504328)
chr4 (220-324)||(25817641-25817745)
chr4 (310-365)||(30220765-30220820)
chr4 (212-335)||(2765385-2765505)
chr4 (206-365)||(16528525-16528687)
chr4 (216-335)||(19482490-19482609)
chr4 (212-343)||(41545383-41545514)
chr4 (211-286)||(42108752-42108827)
chr4 (223-333)||(41485716-41485826)
chr4 (255-335)||(29065295-29065375)
chr4 (219-355)||(51304296-51304431)
chr4 (231-286)||(13218442-13218497)
[»] chr6 (8 HSPs)
chr6 (212-374)||(28867153-28867315)
chr6 (212-392)||(34713469-34713653)
chr6 (210-396)||(6784654-6784844)
chr6 (221-389)||(32871711-32871884)
chr6 (235-341)||(6519231-6519337)
chr6 (212-365)||(2130479-2130632)
chr6 (216-365)||(11301808-11301957)
chr6 (294-390)||(3855694-3855793)
[»] scaffold0122 (1 HSPs)
scaffold0122 (212-348)||(18602-18738)
[»] chr8 (12 HSPs)
chr8 (212-344)||(24068125-24068256)
chr8 (211-365)||(29414351-29414503)
chr8 (210-365)||(5718434-5718597)
chr8 (212-348)||(36947229-36947367)
chr8 (216-374)||(38585066-38585224)
chr8 (212-286)||(29543678-29543752)
chr8 (210-365)||(5686277-5686439)
chr8 (207-389)||(33543313-33543494)
chr8 (214-327)||(35393710-35393823)
chr8 (294-388)||(25124420-25124518)
chr8 (258-392)||(43063808-43063946)
chr8 (255-358)||(26415563-26415666)
[»] scaffold0018 (1 HSPs)
scaffold0018 (218-329)||(69948-70059)
[»] scaffold0194 (1 HSPs)
scaffold0194 (294-391)||(27066-27167)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 31845199 - 31845453
Alignment:
Q  8 ttgaggactttctagtcaatagtcagtaaaactatgaactcctcctaggttagctataagtaaccggggtccagggtatggcctcttttctttttcttca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31845199 ttgaggactttctagtcaatagtcagtaaaactatgaactcctcctaggttggctataagtaaccggggtccagggtatggcctcttttctttttcttca 31845298  T
Q  108 tttgagtggttttttcaattaactataagtttaaccaatgtatatttggattagtggtgttcagtgaaattgagatgacagtgtacgtcctccttttctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31845299 tttgagtggttttttcaattaactataagtttaaccaatgtatatttggattagtggtgttcagtgaaaatgagatgacagtgtacgtcctccttttctt 31845398  T
Q  208 aattgagcattgttatttatccagagagattttatcaagaattgattaagaaaat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31845399 aattgagcattgttatttatccagagagattttatcaagaattgattaagaaaat 31845453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 294 - 597
Target Start/End: Original strand, 31845464 - 31845768
Alignment:
Q  294 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgtgtatctatcatttcccttc 393  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31845464 aaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttcttgataaaatttgtgtatctatcatttcccttc 31845563  T
Q  394 ttaatatatgagta-nnnnnnngtcaaaattacactaattcactgtaattttgtc-atattgactataaatctaaacatgcattgaataaactttgatgn 491  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  31845564 ttaatatatgagtattttttttgtcaaaattacactaattcactgtaattttgtcaatattgactataaatctaaacatgcattgaataaactttgatg- 31845662  T
Q  492 nnnnnnnnnnnnnnatattctcagtgatgtgtcttaaaatgtttattgagcaggacatgatccctacatccgttccactcaaatcccaactcatgtggga 591  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  31845663 ttttttttttttttatattctcagtgatgtgtcttaaaatgtttattgagcaggacatgatccctacatccgtcccactcaaatcccaacttttgtggga 31845762  T
Q  592 atctaa 597  Q
    ||||||    
T  31845763 atctaa 31845768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 601 - 734
Target Start/End: Original strand, 31845737 - 31845867
Alignment:
Q  601 ccactcgaatcccaacttttgtgggaatctaacaaactagagaattgatctagttagattcatctaacaactgatattttgttagaggtaataaggctaa 700  Q
    |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  31845737 ccactcaaatcccaacttttgtgggaatctaacaaactagagtatcgatctagttagattcatctaacaactgatattttgttagagttaataaggctag 31845836  T
Q  701 tccttattattgagttattagtatcatatccaat 734  Q
    ||||||||||||||   |||||||||||||||||    
T  31845837 tccttattattgag---ttagtatcatatccaat 31845867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 212 - 374
Target Start/End: Complemental strand, 19945864 - 19945702
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||  |||||| |||||| ||||||| ||||| |||||||||| |||||||||||||||||| ||    ||||||||||||||||||    
T  19945864 gagcattgctatttatttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatg 19945765  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||||| || |||||    
T  19945764 gtgtgtaattaaggaaagatattaacaaatacactgtcttaaaattttcttgataaattttgt 19945702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 212 - 392
Target Start/End: Original strand, 20142936 - 20143120
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    ||||||||||||||||| |||||| |||||||||||||| || ||||||| ||||||  ||||||||||| |||| ||    |||| |||| ||||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatg 20143035  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccctt 392  Q
     ||||||||||||||||| |||||| ||||||||| |||  ||||||||||||| || ||||    |||||||||||||||||||    
T  20143036 atgtgtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttccctt 20143120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 212 - 374
Target Start/End: Complemental strand, 13716850 - 13716688
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| |||||| |||||||||||||| || ||||||| ||||||  ||||||||||||| || ||   ||||| || |||||||||     
T  13716850 gagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaata 13716751  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    ||||||||||||| |||| |||||||||||||||||| |  ||||||||||||| || |||||    
T  13716750 gtgtgtaattaagaaaaggtgttagcaaatacactgttttgaaattttcttgataaattttgt 13716688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 212 - 359
Target Start/End: Original strand, 37714391 - 37714538
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| |||||| |||||||||  ||| || ||||||| || |||  |||||||||||||||| || |  |||| || |||| |||||    
T  37714391 gagcattgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatg 37714490  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaatttt 359  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  37714491 gtgtgtaattaaggaaaggtgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 38320340 - 38320190
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||| |||||||||| |||||| |||||||||||||| || |||||||  | |||  |||||||||||||||| || |  |||| || ||||||||||    
T  38320340 gagcatcgttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatg 38320241  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttctt 362  Q
     ||||||| ||||||||  ||||| |||||||||||||| |||||||||||    
T  38320240 atgtgtaaataaggaaatgtgttatcaaatacactgtcttaaaattttctt 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 32976162 - 32976007
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggt--aa 309  Q
    ||||| || |||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||    |||| || | ||||  ||    
T  32976162 gagcaatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaa 32976063  T
Q  310 tggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    |||| |||||||||| |||| |||||| ||||||||||| |  |||||||||||||    
T  32976062 tggtatgtaattaagaaaaggtgttagtaaatacactgttttgaaattttcttgat 32976007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 221 - 342
Target Start/End: Original strand, 4434274 - 4434398
Alignment:
Q  221 tatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaag---ggaggtaatggtgtgt 317  Q
    |||||||  ||||||||||||| |||||||||| ||||||| ||| |||||||||||||||||||| |||  ||||| |||   ||||||||||||||||    
T  4434274 tatttattgagagagattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgt 4434373  T
Q  318 aattaaggaaagatgttagcaaata 342  Q
    ||||||| |||  |||| |||||||    
T  4434374 aattaagtaaatgtgttggcaaata 4434398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 3167889 - 3168047
Alignment:
Q  237 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 336  Q
    |||||| |||||||  ||||||||| ||||||  ||||||||||| |||| ||    |||| || | |||||||| ||||||||||| ||||| ||||||    
T  3167889 ttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggtgttag 3167988  T
Q  337 caaatacactgtctaaaaattttcttgatgaaatttgt---gtatctatcatttccctt 392  Q
    |||||| ||| | |||||||||||||||| || |||||    |||||||||||||||||    
T  3167989 caaatatactatttaaaaattttcttgataaattttgtcacttatctatcatttccctt 3168047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 255 - 374
Target Start/End: Original strand, 27007180 - 27007299
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 354  Q
    |||||| |||||||  ||| |||||||||||| ||    |||| |||||||||||| ||||||| |||||||||  ||||| |||||||||||||| |||    
T  27007180 aagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgtcttaaa 27007279  T
Q  355 attttcttgatgaaatttgt 374  Q
    ||||||||||| || |||||    
T  27007280 attttcttgataaattttgt 27007299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 35457377 - 35457518
Alignment:
Q  220 ttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaa 319  Q
    |||||||| || |||| |||||||||||||| || ||||||| || ||| |||||||||||| |||| |     |||| || ||||||||||||||||||    
T  35457377 ttatttatgcatagagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaa 35457475  T
Q  320 ttaaggaaagatgttagcaaatacactgtctaaaaattttctt 362  Q
    |||||||||  ||||| |||||| ||| ||| |||||||||||    
T  35457476 ttaaggaaatgtgttaacaaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 14131206 - 14131308
Alignment:
Q  294 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcc 389  Q
    |||| ||| ||| ||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || || ||||    ||||||||||||||||    
T  14131206 aaatcaagcgagataatggtgtgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttcataaattttgtcactgtatctatcatttcc 14131305  T
Q  390 ctt 392  Q
    |||    
T  14131306 ctt 14131308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 27407416 - 27407537
Alignment:
Q  238 tttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagc 337  Q
    |||||||||||||||| |||||||  | |||| |||||||||||||||| | |   |||| |||| || ||||| ||||||||||||||||  | |||||    
T  27407416 tttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaatgtattagc 27407515  T
Q  338 aaatacactgtctaaaaatttt 359  Q
    ||||||| | ||| ||||||||    
T  27407516 aaatacagtatcttaaaatttt 27407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  313 tgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccc 390  Q
    ||||||||||||||||  |||||||||||||||| ||| |||||||  ||||| || ||||    |||||||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 37899643 - 37899572
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgt 283  Q
    |||||||| |||||||| |||||| ||||||||| |||| || ||||||| || |||  |||||||||||||    
T  37899643 gagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgt 37899572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 8e-54; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 3040401 - 3040238
Alignment:
Q  211 tgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaat 310  Q
    |||||||||||||||| | |||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| || | ||||| ||||||||||||    
T  3040401 tgagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaat 3040302  T
Q  311 ggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  3040301 ggtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttcttgataaattttgt 3040238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 232 - 374
Target Start/End: Complemental strand, 30700990 - 30700848
Alignment:
Q  232 agagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagat 331  Q
    |||| ||||||||| |||  ||||||||||||||||| ||||||||||||||||| ||   ||||||||||||||||||| |||||||||||| |||| |    
T  30700990 agagtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaattaagaaaaggt 30700891  T
Q  332 gttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    ||||||||||||||||||| |||||||| ||||| || |||||    
T  30700890 gttagcaaatacactgtcttaaaatttttttgataaattttgt 30700848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 25493787 - 25493936
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| | ||  | |||| || ||||||||||    
T  25493787 gagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatg 25493886  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttct 361  Q
    |||||||||||||||||  | ||| |||||| |||||||  |||||||||    
T  25493887 gtgtgtaattaaggaaatgtattaacaaatatactgtcttgaaattttct 25493936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 40519147 - 40519299
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| |||||| |||||||||||||| |||||||| | ||||||  |||||||||||||||| || |  ||| | ||||||||||||    
T  40519147 gagcattgctatttatctagagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaa-tcagggaggtaatg 40519245  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
     |||||||||||| ||| || || ||||||||||||||| ||||||||||||||    
T  40519246 atgtgtaattaagaaaaaatattggcaaatacactgtcttaaaattttcttgat 40519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 30735462 - 30735299
Alignment:
Q  211 tgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaat 310  Q
    ||||||||| |||||||| ||| || |||||| ||||||  || |||||||||||||| ||||||||||||||||| ||    |||| ||||||||||||    
T  30735462 tgagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaat 30735363  T
Q  311 ggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    | || ||||||||| |||  |||||||||||||||||| |  ||||||||||||| || |||||    
T  30735362 gctgggtaattaagaaaaagtgttagcaaatacactgttttgaaattttcttgataaattttgt 30735299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 230 - 365
Target Start/End: Original strand, 20359897 - 20360034
Alignment:
Q  230 agagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgtt--atatgctaaaaattaagggaggtaatggtgtgtaattaaggaa 327  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||  || | |   |||| || |||| ||||||||||||||||| |||    
T  20359897 agagagattttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaa 20359996  T
Q  328 agatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    || |||||||||||| || ||||  ||| |||||||||    
T  20359997 aggtgttagcaaatataccgtcttgaaactttcttgat 20360034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 362
Target Start/End: Original strand, 30071738 - 30071889
Alignment:
Q  211 tgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaat 310  Q
    ||||||||| |||||||| | |||| ||||||| |||||| |  ||||||| ||||||  ||||||||||| |||| || |  |||| | || ||||| |    
T  30071738 tgagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagt 30071837  T
Q  311 ggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttctt 362  Q
    ||||||||||| |||||||  ||||||||||||| ||||| |||||||||||    
T  30071838 ggtgtgtaattgaggaaaggagttagcaaatacattgtcttaaaattttctt 30071889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 34280194 - 34280093
Alignment:
Q  264 tctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttg 363  Q
    ||||| ||||||||||||||||| ||    ||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| || ||||| || |||    
T  34280194 tctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaaatattattg 34280095  T
Q  364 at 365  Q
    ||    
T  34280094 at 34280093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 215 - 333
Target Start/End: Complemental strand, 35875876 - 35875758
Alignment:
Q  215 cattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtg 314  Q
    ||||| |||||||  |||||||||||||||||||||||| ||| ||| || | || |||||||||||  | |  ||  ||||||||||||| |||||  |    
T  35875876 cattgctatttatttagagagattttatcaagaattgatcaaggaaaggtttaagccaattaaatttcatgttggccgaaaattaagggagataatgagg 35875777  T
Q  315 tgtaattaaggaaagatgt 333  Q
    |||||||||||||||||||    
T  35875776 tgtaattaaggaaagatgt 35875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 21259186 - 21259235
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaa 261  Q
    |||||||  |||||||| |||||| ||||||||||||||||| |||||||    
T  21259186 gagcatttatatttatctagagagtttttatcaagaattgataaagaaaa 21259235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 34905814 - 34905963
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||  |||||| || ||||||||||    
T  34905814 gagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatg 34905913  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttct 361  Q
     ||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  34905914 atgtataattaaggaaaggtgttagcaaatacactgtcttaaaattttct 34905963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 45853074 - 45852921
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    ||||||||||||||||| | ||||||||||||||||||| || ||||||| ||||||  ||||||||||| |||| ||||   ||| ||||||| |||||    
T  45853074 gagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatg 45852975  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
     | |||||||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  45852974 atatgtaattaagaaaaggtgttagcaaatacacggtcttaaaattttcttgat 45852921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 237 - 365
Target Start/End: Original strand, 2671896 - 2672024
Alignment:
Q  237 ttttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttag 336  Q
    ||||||||||||||||| ||||||| || |||| ||||||||||||||||  ||| ||||| |  |||| ||||| |||||||||||||||||||||||     
T  2671896 ttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgttaa 2671995  T
Q  337 caaatacactgtctaaaaattttcttgat 365  Q
    |||||||||||||| ||||||||||||||    
T  2671996 caaatacactgtcttaaaattttcttgat 2672024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 31192034 - 31192180
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||  ||||||||||||||      ||||||| ||||| ||||| ||||||||||||||||| |  | ||||||||| ||| ||||     
T  31192034 gagcattgctatttatatagagagattttatc------tgattaa-aaaatatctcaatcaattaaatttgttatttattgaaaattaagagagataata 31192126  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  31192127 gtgtgtaattaaggaaagatattagcaaataccctgtcttaaaattttcttgat 31192180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 212 - 347
Target Start/End: Complemental strand, 48897820 - 48897685
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| ||||||||||||||||||||| || || ||||||| ||||  | ||||||||||||| ||   ||||| || |||  |||||    
T  48897820 gagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatg 48897721  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactg 347  Q
    ||||||||||||| ||||||||||||||||| ||||    
T  48897720 gtgtgtaattaagaaaagatgttagcaaatagactg 48897685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 255 - 374
Target Start/End: Complemental strand, 18272060 - 18271941
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 354  Q
    |||||||| |||||  |||||||||||||||| ||    |||| || |||||||||||||||||||||| ||||| ||||||||||||| || ||| |||    
T  18272060 aagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctatcttaaa 18271961  T
Q  355 attttcttgatgaaatttgt 374  Q
    ||||||||||| || |||||    
T  18271960 attttcttgataaattttgt 18271941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 255 - 374
Target Start/End: Original strand, 26442960 - 26443079
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 354  Q
    ||||||| ||||||  |||||||||||||||| ||    |||| |||||||||||||||||||||||||  |||| ||||| ||||||||||||||  ||    
T  26442960 aagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgtcttgaa 26443059  T
Q  355 attttcttgatgaaatttgt 374  Q
    ||||||||||| || |||||    
T  26443060 attttcttgataaattttgt 26443079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 212 - 390
Target Start/End: Original strand, 1632777 - 1632958
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||| ||| |||||||| |||||  ||||||||| |||| || ||||||||||||||   ||||||||||||||| |     |||| || ||||||||||    
T  1632777 gagctttgctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatg 1632875  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccc 390  Q
    |||||||||||| ||||  ||||| ||||||||||||||   |||||| ||||| || ||||    |||||||||||||||||    
T  1632876 gtgtgtaattaaagaaacgtgttaacaaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttccc 1632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 10593592 - 10593526
Alignment:
Q  220 ttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 286  Q
    ||||||||  ||||||||||||||||||||| ||  |||||||||||||  ||||||||||||||||    
T  10593592 ttatttatttagagagattttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttat 10593526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 360
Target Start/End: Complemental strand, 1714075 - 1713970
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 354  Q
    |||||||| | ||| ||||||||||||||||| ||    |||||||||||| |||| |||| |||||||| ||| ||||||  |||||||||||||  ||    
T  1714075 aagaaaatatttcaatcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtcttgaa 1713976  T
Q  355 attttc 360  Q
    ||||||    
T  1713975 attttc 1713970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 10593506 - 10593448
Alignment:
Q  307 taatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    ||||||||| |||||| | |||| ||||| |||||||||| ||| ||||||||||||||    
T  10593506 taatggtgtataattaggaaaaggtgttaacaaatacactatcttaaaattttcttgat 10593448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 21882909 - 21882759
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||||||||  |||||| |||||||||||||||| |||   |||| |||||||||||||    
T  21882909 gagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatg 21882810  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttctt 362  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||||||||    
T  21882809 gtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctt 21882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 212 - 390
Target Start/End: Original strand, 20125558 - 20125740
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||  |||||||| |||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||  ||  | ||||||| | || |||||    
T  20125558 gagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatg 20125657  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccc 390  Q
    |||||||||||| ||||| | ||||||||||||||||||  ||||||||||||| |||||||    |||||||||||||||||    
T  20125658 gtgtgtaattaaagaaaggtattagcaaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttccc 20125740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 8123659 - 8123808
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |  ||||||| |||| ||||     
T  8123659 gagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataata 8123758  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttct 361  Q
     ||| ||||||| ||||| |||||||||||| || |||  ||||||||||    
T  8123759 atgtataattaaagaaaggtgttagcaaatataccgtcctaaaattttct 8123808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 213 - 365
Target Start/End: Original strand, 22631449 - 22631601
Alignment:
Q  213 agcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatgg 312  Q
    |||||||||||||||| | ||| ||||||| |||||||||| |||||||  |||||| |||||||||||||||| ||    |||| || |||| |||| |    
T  22631449 agcattgttatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatag 22631548  T
Q  313 tgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    ||||||||||||||||| ||||||| ||||||| ||||  |||||||||||||    
T  22631549 tgtgtaattaaggaaaggtgttagctaatacaccgtcttgaaattttcttgat 22631601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 46297581 - 46297711
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||  |||||||| |||||| |||||||||||||| || ||||||||||||||| || || |||||||||| ||   ||||| ||||||| |||||    
T  46297581 gagcattactatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatg 46297680  T
Q  312 gtgtgtaattaaggaaagatgttagcaaata 342  Q
    |||||||||||||||||  ||||||||||||    
T  46297681 gtgtgtaattaaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 215 - 354
Target Start/End: Complemental strand, 23730640 - 23730503
Alignment:
Q  215 cattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtg 314  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||| || ||||  ||||||||| ||||| ||    |||| ||| |||||||||  |    
T  23730640 cattgctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatg--g 23730543  T
Q  315 tgtaattaaggaaagatgttagcaaatacactgtctaaaa 354  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  23730542 tgtaattaaggaaaggtgttaacaaatacactgtctaaaa 23730503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 1985023 - 1985127
Alignment:
Q  261 atgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttc 360  Q
    ||||||||| |||||||||||||||| |||   |||| |||| |||||||||| ||||||||||||||  |||||||||||||||| ||| |||||||||    
T  1985023 atgtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaaattttc 1985122  T
Q  361 ttgat 365  Q
    |||||    
T  1985123 ttgat 1985127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 221 - 372
Target Start/End: Original strand, 19511387 - 19511538
Alignment:
Q  221 tatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaat 320  Q
    ||||||||  ||||||||||||||||||||||||||||||| || | || ||||||||||| |||| |  |  |||| || |||| |||| ||| |||||    
T  19511387 tatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaat 19511486  T
Q  321 taaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaattt 372  Q
    ||||||||| |||||  |||||||||||||  ||||||| ||||| ||||||    
T  19511487 taaggaaaggtgttaataaatacactgtctcgaaatttttttgataaaattt 19511538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 24250594 - 24250456
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| ||| |||| | |||||||||||||||||||||| |||||||  ||| |  ||||| |||||||||| ||    |||| |||||||||||||    
T  24250594 gagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatg 24250495  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtct 350  Q
    || |||||||||| |||||| |||| |||||| ||||||    
T  24250494 gtttgtaattaagaaaagatattagtaaatacgctgtct 24250456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 255 - 392
Target Start/End: Complemental strand, 46413843 - 46413699
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaa---aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtcta 351  Q
    ||||||||||||||  |||||||||||||||| || |     |||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||     
T  46413843 aagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtctt 46413744  T
Q  352 aaaattttcttgatgaaatttg----tgtatctatcatttccctt 392  Q
     ||||||| || || || ||||    |||||||||||||||||||    
T  46413743 gaaatttttttaataaattttgtcaatgtatctatcatttccctt 46413699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 365
Target Start/End: Complemental strand, 23611880 - 23611737
Alignment:
Q  221 tatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaat 320  Q
    |||||||| |||||| |||||| ||||||| || ||||||||||||||   ||||||||||||||| ||    |||| ||| ||||||||||  ||||||    
T  23611880 tatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatgg-atgtaat 23611782  T
Q  321 taaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    |||| |||| ||||| |||||||||||| |  |||||||||||||    
T  23611781 taagtaaaggtgttaacaaatacactgttttgaaattttcttgat 23611737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 44600980 - 44601106
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    ||||||||||||||||    |||| ||||||||||||||   ||||||||||| ||| ||||||||||||||||| ||          |||||| |||||    
T  44600980 gagcattgttatttat----agagtttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttg--------gcagggagataatg 44601067  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtct 350  Q
     |||||||||||| |||  ||||||||||||||||||||    
T  44601068 atgtgtaattaagaaaatgtgttagcaaatacactgtct 44601106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 217 - 392
Target Start/End: Original strand, 10061565 - 10061740
Alignment:
Q  217 ttgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtg 316  Q
    |||||||||||| |||||| |||||||||||||| || || |||| ||||||  |||||||||||||||| ||  | |||| ||||||||||||| ||||    
T  10061565 ttgttatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtg 10061664  T
Q  317 taattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgtgtatctatcatttccctt 392  Q
    ||||||||||||  |||||||||||| |||||||  ||||||||||||| || ||||| |||||||||||||||||    
T  10061665 taattaaggaaatgtgttagcaaataaactgtcttgaaattttcttgataaattttgtctatctatcatttccctt 10061740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 212 - 391
Target Start/End: Original strand, 29657332 - 29657515
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||  |||||||| |||||||||||||||| ||||| | ||||||| ||||||  |||||||||||||||| |||  ||||| || ||||||||||    
T  29657332 gagcattcctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatg 29657431  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccct 391  Q
     | ||||||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||    ||||||||||||||||||    
T  29657432 atatgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttccct 29657515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 23906746 - 23906608
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| ||| || ||||||||||||||||| ||||||| || |||| |||||||||||||||| ||| | |||| ||| |||||||||    
T  23906746 gagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatg 23906647  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtct 350  Q
    |||||||||||| ||||| |||||||||||||| |||||    
T  23906646 gtgtgtaattaaagaaaggtgttagcaaatacattgtct 23906608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 211 - 363
Target Start/End: Complemental strand, 43537289 - 43537134
Alignment:
Q  211 tgagcattgttatttatccagagagatttt---atcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggt 307  Q
    |||||||||||||||||| |||||| ||||   |||||||||| || ||||||| ||||||| |||||||||||||||| |||   |||| |||||||||    
T  43537289 tgagcattgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggt 43537190  T
Q  308 aatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttg 363  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||  |||||||||||    
T  43537189 aatggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttcttg 43537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 374
Target Start/End: Original strand, 35412998 - 35413156
Alignment:
Q  216 attgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgt 315  Q
    |||| |||||||| |||||| ||||||||| |||| || ||||||| ||||||  |||||||||||||||| ||    |||| |||||||||||| ||||    
T  35412998 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgt 35413097  T
Q  316 gtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    |||||||||||||| ||||| |||||||||| |||  ||||||||||||| || |||||    
T  35413098 gtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaattttgt 35413156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 230 - 365
Target Start/End: Original strand, 26469930 - 26470065
Alignment:
Q  230 agagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaag 329  Q
    |||||| |||||||||||||| || ||||||||||||||   |||||||||| |||| |  | ||||| || | || |||||||||||||||||||||||    
T  26469930 agagagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaag 26470029  T
Q  330 atgttagcaaatacactgtctaaaaattttcttgat 365  Q
     |||||||||||||||||| | ||||||||||||||    
T  26470030 gtgttagcaaatacactgttttaaaattttcttgat 26470065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 21540042 - 21540180
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||  |||||| |||||||||||| | || ||||||||||||||| |||||||||||||||| ||    |||||||||||| |||||    
T  21540042 gagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatg 21540141  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtct 350  Q
      |||||||||| ||||| ||||| ||||||||||||||    
T  21540142 aagtgtaattaaagaaaggtgttaacaaatacactgtct 21540180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 220 - 374
Target Start/End: Complemental strand, 35149796 - 35149642
Alignment:
Q  220 ttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaa 319  Q
    ||||||||| |||||| |||||||||||||| || |||||||| ||| |  |||||||||||||||| ||  | |||| ||||||| ||||| ||| |||    
T  35149796 ttatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataa 35149697  T
Q  320 ttaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    |||||||||| |||||||||||||| | |||  ||||||| ||||| || |||||    
T  35149696 ttaaggaaaggtgttagcaaatacattctcttgaaatttttttgataaattttgt 35149642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 49313574 - 49313649
Alignment:
Q  211 tgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 286  Q
    ||||||||| |||||||||| |||| ||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  49313574 tgagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttat 49313649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 212 - 392
Target Start/End: Original strand, 48852611 - 48852795
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    ||||||||||||||||| |||||| |||||| ||||||| || || ||||||| | | ||||||||||||||||| |   |||||| || | || |||||    
T  48852611 gagcattgttatttatctagagagtttttattaagaatttatcaaaaaaatgttttaatcaattaaatttgttatttagaaaaaatcaaagaagataatg 48852710  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccctt 392  Q
     ||| |||||||| ||| |||||| |||||||| ||| | |||| ||| ||||| || ||||    || ||||||||||||||||    
T  48852711 atgtataattaagaaaaaatgttaacaaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccctt 48852795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 11469994 - 11470130
Alignment:
Q  215 cattgttatttatccagagagatttt-atcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggt 313  Q
    |||||||||||||  |||||| |||| || ||||||| || |||||||| ||| |  |||||||||||||||| ||    |||| ||||||||||||| |    
T  11469994 cattgttatttattaagagagttttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgat 11470093  T
Q  314 gtgtaattaaggaaagatgttagcaaatacactgtct 350  Q
    ||||||||||| ||| ||||||  ||||||| |||||    
T  11470094 gtgtaattaagaaaatatgttaagaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 9113518 - 9113447
Alignment:
Q  295 aattaagggaggtaatggtgtgtaattaaggaaagatgttagc-aaatacactgtctaaaaattttcttgat 365  Q
    ||||||||||||||||| | ||||||||||||||| | ||||| ||||||||| ||| ||||||||||||||    
T  9113518 aattaagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttcttgat 9113447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 4684517 - 4684590
Alignment:
Q  293 aaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatg 366  Q
    ||||| || |||| ||||||||||||||||||||||| ||||||||||||   ||| | |||||||||||||||    
T  4684517 aaaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaatatgttgtttgaaaattttcttgatg 4684590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 35360380 - 35360427
Alignment:
Q  216 attgttatttatccagagagattttatcaagaattgattaagaaaatg 263  Q
    ||||||||||||  |||||||||||||||| ||||||| |||||||||    
T  35360380 attgttatttatttagagagattttatcaataattgatcaagaaaatg 35360427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 47996653 - 47996743
Alignment:
Q  220 ttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaat 310  Q
    |||| |||| |||||| |||||||   |||||||  | ||||||| |||||||||||||||| ||||  |||  |||||||||||||||||    
T  47996653 ttatctatctagagagtttttatccgaaattgatccaaaaaatgtttcagtcaattaaatttcttattggctggaaattaagggaggtaat 47996743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 207 - 362
Target Start/End: Original strand, 24060539 - 24060694
Alignment:
Q  207 taattgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggagg 306  Q
    |||| ||||||||||||||||| | |||  ||||||||||||||||| |||||||||||| ||  |||||||||||||||  | || |||| |||||||     
T  24060539 taatagagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggaga 24060638  T
Q  307 taatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttctt 362  Q
    ||||||||||||||||||||||  |||||||||||||||||| | |||||||||||    
T  24060639 taatggtgtgtaattaaggaaatgtgttagcaaatacactgttttaaaattttctt 24060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 230 - 365
Target Start/End: Original strand, 5288508 - 5288643
Alignment:
Q  230 agagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaag 329  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||   |||| ||||||| |||||||||||||||||  |||     
T  5288508 agagagattttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaat 5288607  T
Q  330 atgttagcaaatacactgtctaaaaattttcttgat 365  Q
     |||||||||||| || ||||  ||| |||||||||    
T  5288608 gtgttagcaaatataccgtcttgaaactttcttgat 5288643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 215 - 365
Target Start/End: Complemental strand, 42504328 - 42504181
Alignment:
Q  215 cattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtg 314  Q
    ||||| |||||||| |||||| ||||||   |||||||| |||||||  | |||  |||||||||||||||| |||   |||| ||||||||||||| ||    
T  42504328 cattgctatttatctagagagtttttat---gaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatg 42504232  T
Q  315 tgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  42504231 tgtaattaaggaaaggtgttaacaaatacactgtcttaaaattttcttgat 42504181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 220 - 324
Target Start/End: Original strand, 25817641 - 25817745
Alignment:
Q  220 ttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaa 319  Q
    |||| |||| ||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||    |||| ||| |||||||||||||||||    
T  25817641 ttatatatctagagacattttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaa 25817740  T
Q  320 ttaag 324  Q
    |||||    
T  25817741 ttaag 25817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 30220765 - 30220820
Alignment:
Q  310 tggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  30220765 tggtgtgtaattaaggaaaagtgttagcaaatacactgtcttaaaattttcttgat 30220820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 335
Target Start/End: Complemental strand, 2765505 - 2765385
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||   ||||| |||||| |||| ||||| ||||||| |||| || ||||||||||||||||  || |||||| | ||||| |||||    
T  2765505 gagcattgctatttat---gagagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatg 2765409  T
Q  312 gtgtgtaattaaggaaagatgtta 335  Q
     ||||||||||| ||||| |||||    
T  2765408 atgtgtaattaatgaaaggtgtta 2765385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 206 - 365
Target Start/End: Original strand, 16528525 - 16528687
Alignment:
Q  206 ttaattgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaaggga- 304  Q
    ||||| ||| |||| |||||||| |||||||||||||  ||||||||| || | || ||||||| |||||||||||||||| ||    |||| ||  ||     
T  16528525 ttaatagagtattgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaatgat 16528624  T
Q  305 --ggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
        ||||||||||||||||| ||||  ||||| |||||||||| ||| ||||||||||||||    
T  16528625 atattaatggtgtgtaattaaagaaatgtgttaacaaatacactatcttaaaattttcttgat 16528687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 335
Target Start/End: Original strand, 19482490 - 19482609
Alignment:
Q  216 attgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgt 315  Q
    |||| |||||||| |||||| |||  | ||||||| || |||||||| | |||  |||||||||||||||| ||    |||| |||||| ||||||||||    
T  19482490 attgctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgt 19482589  T
Q  316 gtaattaaggaaagatgtta 335  Q
    |||||||||||||| |||||    
T  19482590 gtaattaaggaaaggtgtta 19482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 212 - 343
Target Start/End: Original strand, 41545383 - 41545514
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||  |||||||| |||||| ||  |||||||||| || ||||||| | ||||  |||||||||||||||| ||  | ||||  | | |||||||     
T  41545383 gagcattactatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaatt 41545482  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatac 343  Q
    |||||||||||| ||||| |||||||||||||    
T  41545483 gtgtgtaattaatgaaaggtgttagcaaatac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 42108827 - 42108752
Alignment:
Q  211 tgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 286  Q
    ||||| |||||||||||| ||| |  ||||||||||||||||| ||||||| || |||| ||||||||||||||||    
T  42108827 tgagcgttgttatttatctagaaattttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttat 42108752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 41485716 - 41485826
Alignment:
Q  223 tttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaatta 322  Q
    |||||| |||||| ||||||||||||||||| ||||||| || | || |||||||||||  |    ||   ||||||||||||||||||| |||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggaggtaatggggtgtaatta 41485815  T
Q  323 aggaaagatgt 333  Q
    || ||||||||    
T  41485816 agaaaagatgt 41485826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 29065375 - 29065295
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtta 335  Q
    ||||||| |||||| ||||||||||||||||| ||    |||| || |||||||||||||||||||||| ||||| |||||    
T  29065375 aagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgtta 29065295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 51304431 - 51304296
Alignment:
Q  219 gttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgta 318  Q
    |||||||||| |||||| |||||| ||||||  || |||||||| || || ||||||||||||||||| ||    |||| || |||| |||||| ||| |    
T  51304431 gttatttatctagagagtttttattaagaatatat-aagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgca 51304333  T
Q  319 attaaggaaagatgttagcaaatacactgtctaaaaa 355  Q
    |||||  ||| ||||||||||||||| ||||| ||||    
T  51304332 attaaaaaaatatgttagcaaatacattgtcttaaaa 51304296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 13218442 - 13218497
Alignment:
Q  231 gagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 286  Q
    ||||| |||||| || |||| |||||||||| ||||| ||||||||||||||||||    
T  13218442 gagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttat 13218497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 212 - 374
Target Start/End: Original strand, 28867153 - 28867315
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| || ||| ||||||||||||||||| || |  |||| || |||||||||     
T  28867153 gagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaata 28867252  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    || ||||||||||||||  | |||||||||||| |||||  |||||||||||||  |||||||    
T  28867253 gtatgtaattaaggaaatgttttagcaaatacattgtcttgaaattttcttgatacaatttgt 28867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 212 - 392
Target Start/End: Original strand, 34713469 - 34713653
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| ||||||| ||||||| |||||||||||||| || |||||| |||||||   ||||||||||||||| ||   ||||| |||||| ||||||    
T  34713469 gagcattgctatttattcagagagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatg 34713568  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttccctt 392  Q
    ||||||| ||||| |||| ||||| |||||||||| ||| |||||||||||||| || ||||    |||||||||||||||||||    
T  34713569 gtgtgtatttaagaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttccctt 34713653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 210 - 396
Target Start/End: Complemental strand, 6784844 - 6784654
Alignment:
Q  210 ttgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaa 309  Q
    |||||||||| |||||||| |||||| ||||||||| |||| || || ||||  |||||| |||||||||||||||| ||    |||| ||||||| |||    
T  6784844 ttgagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataa 6784745  T
Q  310 tggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcccttctta 396  Q
    ||||||||||||||| |||| |||||||||||||||| |||  |||||||||||||| | ||||    | ||||||||||||||| |||||    
T  6784744 tggtgtgtaattaagaaaaggtgttagcaaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttcccatctta 6784654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 221 - 389
Target Start/End: Complemental strand, 32871884 - 32871711
Alignment:
Q  221 tatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaat 320  Q
    |||||||| |||||| |||||||||||||| || ||||||| || |||  |||||||||||||||| ||    |||| |||||||||||| |||||||||    
T  32871884 tatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaat 32871785  T
Q  321 taaggaaagatgttagcaaatacactgtc-taaaaattttcttgatgaaatttg----tgtatctatcatttcc 389  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||| || ||||    ||||||||||||||||    
T  32871784 taaggaaaaatgttagtaaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 6519231 - 6519337
Alignment:
Q  235 gattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgtt 334  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||  ||||| || ||| |||||| |||||||||||| |||   |||    
T  6519231 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagtt 6519330  T
Q  335 agcaaat 341  Q
    |||||||    
T  6519331 agcaaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 2130632 - 2130479
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    ||||||||||||||||| |||||| ||| || || |||| || |||||||  |||||  |||||||||||||||| ||    |||| || |||||| ||     
T  2130632 gagcattgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgatt 2130533  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    |||||||||||||||||| ||||||||||||||| || |  |||||||||||||    
T  2130532 gtgtgtaattaaggaaaggtgttagcaaatacaccgttttgaaattttcttgat 2130479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 365
Target Start/End: Original strand, 11301808 - 11301957
Alignment:
Q  216 attgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgt 315  Q
    |||| |||||||  |||||  ||||||||||||||||| | ||||| ||||||||||||| |||||||||| |    ||||| |||  ||||||| || |    
T  11301808 attgctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaatagtat 11301907  T
Q  316 gtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
     |||||||||||||||||||| ||||||||| | | ||||||||||||||    
T  11301908 ataattaaggaaagatgttaggaaatacactattttaaaattttcttgat 11301957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 3855793 - 3855694
Alignment:
Q  294 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcc 389  Q
    ||||||||||| |||||  ||||||||||||||||| ||||||| ||||||||||||  ||||||||||||| || ||||    ||||||||||||||||    
T  3855793 aaattaagggatgtaataatgtgtaattaaggaaaggtgttagc-aatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 3855695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 348
Target Start/End: Original strand, 18602 - 18738
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| | ||||||||||| |||||||||| ||||||| |||| ||||||||||||||||||| ||   ||||||||||||| |||||    
T  18602 gagcattgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatg 18701  T
Q  312 gtgtgtaattaaggaaagatgttagcaaatacactgt 348  Q
    ||| |||||||||||||  ||||||||||||||||||    
T  18702 gtgagtaattaaggaaatgtgttagcaaatacactgt 18738  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 24068256 - 24068125
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatg 311  Q
    |||||||| |||||||| ||||||||||||||||||||||||  |||||| ||||||| |||||||||||||||| |||  ||||| || |||||| |||    
T  24068256 gagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgc-caaaatcaaaggaggtgatg 24068158  T
Q  312 gtgtgtaattaaggaaagatgttagcaaataca 344  Q
    ||||||||||||||||||||||||| |||||||    
T  24068157 gtgtgtaattaaggaaagatgttaggaaataca 24068125  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 29414351 - 29414503
Alignment:
Q  211 tgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaat 310  Q
    ||||||||| |||||||| ||||   ||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||  ||||| |||| |||||||    
T  29414351 tgagcattgctatttatctagagt--ttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaat 29414448  T
Q  311 ggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    ||||| ||||||||||||| ||||| ||||| |||||| |  |||||||||||||    
T  29414449 ggtgtttaattaaggaaaggtgttaacaaatgcactgttttgaaattttcttgat 29414503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 5718597 - 5718434
Alignment:
Q  210 ttgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcag--------tcaattaaatttgttatatgctaaaaattaag 301  Q
    |||||||||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||        |||||||||||| |||| ||    |||| |||    
T  5718597 ttgagcattggtatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaag 5718498  T
Q  302 ggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    | |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  5718497 gaaggtaatggtgtgtaattaaggaaatgtgttagcaaatacactgtcttaaaattttcttgat 5718434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 36947367 - 36947229
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaa--tgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaa 309  Q
    ||||||||||||||||| |||||||||||||||||||||||| || ||||  ||| ||| |||||||||||||||||  || |||||| |||||||||||    
T  36947367 gagcattgttatttatctagagagattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggtaa 36947268  T
Q  310 tggtgtgtaattaaggaaagatgttagcaaatacactgt 348  Q
    || ||| ||||||| ||||  |||||  |||||||||||    
T  36947267 tgatgtataattaaagaaatgtgttaataaatacactgt 36947229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 374
Target Start/End: Complemental strand, 38585224 - 38585066
Alignment:
Q  216 attgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgt 315  Q
    |||| |||||||  |||||| |||||||||||||| || |||||||||| ||| | |||||||||||| || ||    |||| || ||||||||| ||||    
T  38585224 attgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgt 38585125  T
Q  316 gtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt 374  Q
    |||||||| ||||  |||||||||||||| ||  |  ||||||||||||| || |||||    
T  38585124 gtaattaaagaaaagtgttagcaaatacattgctttgaaattttcttgataaattttgt 38585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 29543752 - 29543678
Alignment:
Q  212 gagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttat 286  Q
    ||||||||||||||||| |||||| ||||||||| |||| || |||||||| |||||  ||||||||||||||||    
T  29543752 gagcattgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttat 29543678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 5686439 - 5686277
Alignment:
Q  210 ttgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtc--------tcagtcaattaaatttgttatatgctaaaaattaag 301  Q
    |||||||||| ||||||||  |||| |||| ||||||||||||| ||||||| |||        ||| ||||||||||||||||| |||   |||| |||    
T  5686439 ttgagcattgctatttatcttgagaaattt-atcaagaattgatcaagaaaaggtcccaaactctcaatcaattaaatttgttatttgccggaaatcaag 5686341  T
Q  302 ggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgat 365  Q
    |||||||||  | ||||||||| ||||  ||||||||||||| || |||  |||||||||||||    
T  5686340 ggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttcttgat 5686277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 389
Target Start/End: Original strand, 33543313 - 33543494
Alignment:
Q  207 taattgagcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggagg 306  Q
    |||| ||||||||||||||||  | |||  ||||||||| |||| || || |||||||||||  |||| ||||||||||| ||    |||| |||||||     
T  33543313 taatcgagcattgttatttatt-atagaatttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggaga 33543410  T
Q  307 taatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttgt--gtatctatcatttcc 389  Q
    ||||| |||||||||||  |||| ||||| |||||| |||||||  | ||||||||||| || |||||  |||||||||||||||    
T  33543411 taatg-tgtgtaattaaaaaaaggtgttaacaaatatactgtcttgatattttcttgataaattttgtcagtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 327
Target Start/End: Original strand, 35393710 - 35393823
Alignment:
Q  214 gcattgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggt 313  Q
    |||||| |||||||| |||||| ||||||||||||||||| ||||||  || | || ||||| |||||  |||   |  ||||| ||||||||||||||     
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggg 35393809  T
Q  314 gtgtaattaaggaa 327  Q
    ||||||||||||||    
T  35393810 gtgtaattaaggaa 35393823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 25124420 - 25124518
Alignment:
Q  294 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttc 388  Q
    |||| ||| ||| ||||| |||||||||||| |||| | ||| ||||||||||||||  ||||||||||||| || ||||    |||||||||||||||    
T  25124420 aaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 43063946 - 43063808
Alignment:
Q  258 aaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaatt 357  Q
    |||| ||||||||||||||||||| |||| || | ||||| ||   |||||||| ||| |||||||  |||||| ||| |||||||| | ||| ||||||    
T  43063946 aaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaaaaaaagatattaacaaatacattatctcaaaatt 43063847  T
Q  358 ttcttgatgaaatttg----tgtatctatcatttccctt 392  Q
    ||||| ||  | ||||    |||||||||||||||||||    
T  43063846 ttcttaatacattttgtcgatgtatctatcatttccctt 43063808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 358
Target Start/End: Original strand, 26415563 - 26415666
Alignment:
Q  255 aagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaa 354  Q
    ||||||| ||||||  ||||||||||| |||| ||    |||||||  ||| ||||| ||||||||||||||||| | |||||||||| ||| ||| |||    
T  26415563 aagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactatcttaaa 26415662  T
Q  355 attt 358  Q
    ||||    
T  26415663 attt 26415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 70059 - 69948
Alignment:
Q  218 tgttatttatccagagagattttatcaagaattgattaagaaaatgtctcagtcaattaaatttgttatatgctaaaaattaagggaggtaatggtgtgt 317  Q
    ||||||||||| |||||| ||||||| | ||||||| ||||||| || |||| ||||||||||||||||  ||   |||| ||||||| |||||| ||||    
T  70059 tgttatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgt 69960  T
Q  318 aattaaggaaag 329  Q
    ||||||||||||    
T  69959 aattaaggaaag 69948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 27167 - 27066
Alignment:
Q  294 aaattaagggaggtaatggtgtgtaattaaggaaagatgttagcaaatacactgtctaaaaattttcttgatgaaatttg----tgtatctatcatttcc 389  Q
    |||| ||||||| |||| | |||||||||||||||| ||||| ||||||||||||||  ||||||||||||| || ||||    ||||||||||||||||    
T  27167 aaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 27068  T
Q  390 ct 391  Q
    ||    
T  27067 ct 27066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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