View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5199-Insertion-5 (Length: 560)
Name: NF5199-Insertion-5
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 41133519 - 41132966
Alignment:
| Q |
8 |
tttttatgtattggtgatttaccaagatgtcaaaatttgagggtgttatcgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcag |
107 |
Q |
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| T |
41133519 |
tttttatgtattggtgatttaccaagatgtcaaaatttgagggtgttattgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcag |
41133420 |
T |
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| Q |
108 |
ccttaaatcaaaagtaagttcttttctttctttccttatacaaaggaccttttggtccaatttcatgttttgtatgtgttannnnnnnnnnacctatgtt |
207 |
Q |
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| T |
41133419 |
ccttaaatcaaaagtaagttcttttctttctttccttatacaaaggacattttggtccaatttcatgttttgtatgtgttattttttttttacctatgtt |
41133320 |
T |
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| Q |
208 |
gcttttctttgtggtggtgtagtttatctctttcaaaaatcagaatggtaaagttacatatggagatttaccatctttaatgatgaagctaaaggcattc |
307 |
Q |
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| T |
41133319 |
gcttttctttgtggtggtgtagtttatctctttcaaaaatcagaatggtaaagttacatatggagatttaccatctttaatgatgaagctaaaggcattc |
41133220 |
T |
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| Q |
308 |
atagatatgtacagtgaagatgagattagggggatcttgaatgaatcaggcaatgattttccaactgatgttgattttgaagccttcttaatggtaagta |
407 |
Q |
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| T |
41133219 |
gtagatatgtacagtgaagatgagattagggggatcttgaatgaatcaggcaatgattttacaactgatgttgattttgaagccttcttaacggtaagta |
41133120 |
T |
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| Q |
408 |
aattttatggttttcacatttatttttcaatattattaatagaaacgtgttttgttactag-nnnnnnnnnnnnccgcctctaacttaaacagatatgta |
506 |
Q |
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| T |
41133119 |
aattttatggttttcacatttatttttcaatattattaatagaaacgtgttttgttactagaaaaaaaaaaataccgcctctaacttaaacagatatgta |
41133020 |
T |
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| Q |
507 |
agcgtacacaagaacacaaacaattgatcatagttcggctaattgtgtctatgt |
560 |
Q |
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| T |
41133019 |
agcgtacacaaaaacacaaacaattgatcatagttcggttaattgtgtctatgt |
41132966 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 18575419 - 18575471
Alignment:
| Q |
72 |
gcttcaaagccagtttacacaggttgaacttcgcagccttaaatcaaaagtaa |
124 |
Q |
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| T |
18575419 |
gcttcaaaaccagtttacacaagttgagcttcgcagcttaaaatcacaagtaa |
18575471 |
T |
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