View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5199-Insertion-6 (Length: 478)
Name: NF5199-Insertion-6
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 242 - 478
Target Start/End: Original strand, 29105084 - 29105318
Alignment:
| Q |
242 |
taacgtttccatgggagtcggggttgtgttgtgtctatatatagtaccacggaactaaaaacatatatctatcactgttggagagaatacgataaaagat |
341 |
Q |
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| T |
29105084 |
taacgtttccatgggagtcggggttgtgttgtgtctatatatagtaccacggaactaaaaacatat--ctatcactgttggagagaatacgataaaagat |
29105181 |
T |
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| Q |
342 |
gtaaaaaaggggtccaaaggcaatgaacttttgagaaaatcattccttcaattatgcactatggtttaacacatatcaaattgcttgttgcaacaaacag |
441 |
Q |
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| T |
29105182 |
gtaaaaaaggggtccaaaggcaatgaacttttgtgcaaatcattccttcaattatgcactatggtttaacacatatcaaattgcttgttgcaacaaacag |
29105281 |
T |
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| Q |
442 |
gaaaaatggacctaccatatatctaattaaggacgga |
478 |
Q |
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| T |
29105282 |
gaaaaatggacctaccatatatctaattaaggacgga |
29105318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 29104912 - 29105087
Alignment:
| Q |
42 |
ctgttcctggcttattgtgcatattcttagtttcccatacttctaatgagttgttggatttgagtttgcaatgaagatttgtgaatcaattgggcacatg |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104912 |
ctgttcctggcttattgtgcatattcttagtttcccatacttctaatgagttgttggatttgagtttgcaatgaagatttgtgaatcaattgggcacatg |
29105011 |
T |
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| Q |
142 |
ttt-------------agattgtgagaatatgatgaaatcaccgttaatccaaacatacacttaaatcggcttaac |
204 |
Q |
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| T |
29105012 |
ttttagattgacgatgagattgtaagaatctgataaaatcaccgttaatccaaacatacacttaaatcggcttaac |
29105087 |
T |
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