View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5199-Insertion-7 (Length: 471)
Name: NF5199-Insertion-7
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 26 - 413
Target Start/End: Complemental strand, 38140810 - 38140405
Alignment:
| Q |
26 |
ccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagtatccaatttctttgtccatcagaatat |
125 |
Q |
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| T |
38140810 |
ccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagtatccaatttctttgtccatcagaatat |
38140711 |
T |
|
| Q |
126 |
gtgcatgatataatatatcacaccatatcatagaaaataagaacattt----------------tatgtaagtt-aataaatattcttactcgtgagtcg |
208 |
Q |
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| T |
38140710 |
gtgcatgatataatatatcacaccatatcatagaaaataagaacattttatggaagaacaaatttatgtaagttaaataaatattcttactcgtgagtcg |
38140611 |
T |
|
| Q |
209 |
tgtttgcctaagaaataatgtttcaaggcatgttgtcnnnnnnnaat-aaagagtagcaccatatatttctaatgnnnnnnnnttgaaaaataagacggt |
307 |
Q |
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| T |
38140610 |
tgtttgcctaagaaataatgtttcaaggcatgttgtctttttttaataaaagagtagcaccatatatttctaatgtaaaaaaattgaaaaataagacggt |
38140511 |
T |
|
| Q |
308 |
aaacaaaagtataatgtacatgtcaaaatgtggtctctaggaggattacaccaaccaccattgtcaccagggagagcaaagtataacgtactttctatca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
38140510 |
aaacaaaagtataatgtacatgtcaaaatgtggtctctaggaggattacaccaaccaccattgtcaccagggagagcaaagtatagcgtactttctgcca |
38140411 |
T |
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| Q |
408 |
agctgc |
413 |
Q |
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|||||| |
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| T |
38140410 |
agctgc |
38140405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 38152704 - 38152631
Alignment:
| Q |
26 |
ccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38152704 |
ccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagta |
38152631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 38165350 - 38165288
Alignment:
| Q |
325 |
acatgtcaaaatgtggtctctaggaggattacaccaaccaccattgtcaccagggagagcaaagt |
389 |
Q |
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| T |
38165350 |
acatgtcaaaatgtggtct--aggaggattacaccaaccaccattgtcactaggaagagcaaagt |
38165288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 38108354 - 38108284
Alignment:
| Q |
26 |
ccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaa |
96 |
Q |
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|||||||||| ||| ||||||||||||||||| ||| |||||| | ||||||||||||| || |||||| |
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| T |
38108354 |
ccttcaactggtgagatcatcaaacaacaatctatgaagatgtcacatatcaaatagtagattttcagaaa |
38108284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 45506898 - 45506944
Alignment:
| Q |
343 |
tctaggaggattacaccaaccaccattgtcaccagggagagcaaagt |
389 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
45506898 |
tctagggggattacaccaaccaccattgtcattagggagtgcaaagt |
45506944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 45512358 - 45512404
Alignment:
| Q |
343 |
tctaggaggattacaccaaccaccattgtcaccagggagagcaaagt |
389 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
45512358 |
tctagggggattacaccaaccaccattgtcattagggagtgcaaagt |
45512404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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