View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5199-Insertion-8 (Length: 208)
Name: NF5199-Insertion-8
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 35190027 - 35189866
Alignment:
| Q |
8 |
ctaccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgccatctttggg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35190027 |
ctaccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgccatctttggg |
35189928 |
T |
|
| Q |
108 |
agaatctccaagtcttcgatttctatctcaaatacaacaaacacaccatcaacaacaacgac |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35189927 |
agaatctccaagtcttcgatttctatctcaaatacaacaaacacaccatcaacaacaacgac |
35189866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 25032389 - 25032266
Alignment:
| Q |
8 |
ctaccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgccatctttggg |
107 |
Q |
| |
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||||| ||| ||||||||| |||||||||||| ||||||||||||| || | |||| |||||| |||| |||||||| | ||||| |||| ||| |
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| T |
25032389 |
ctaccggacccactcctcttccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctggc |
25032290 |
T |
|
| Q |
108 |
agaatctccaagtcttcgatttct |
131 |
Q |
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||||||| |||| |||||| |||| |
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| T |
25032289 |
agaatctacaagccttcgaattct |
25032266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 20504940 - 20505045
Alignment:
| Q |
9 |
taccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgccatctttggga |
108 |
Q |
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|||||||||||||||| ||||| || || || ||||| || ||||||| | |||||| || | | |||||| || |||||||||||||| |||||||| |
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| T |
20504940 |
taccagactcactcctatgccacatcctatcattccttcctaccaaaacctccgtcatgacgaccagtctcgtttcccgccgttggcgccacctttggga |
20505039 |
T |
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| Q |
109 |
gaatct |
114 |
Q |
| |
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| |||| |
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|
| T |
20505040 |
gcatct |
20505045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 30076799 - 30076899
Alignment:
| Q |
26 |
tgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgccatctttgggagaatctccaagtcttcg |
125 |
Q |
| |
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||||||||||| |||||||||||||| || | ||||| |||| || |||||||||||| | | ||||| || || |||||| ||||||| ||||||| |
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| T |
30076799 |
tgccatatactatccttcctcccaactcgaacctccgtcgcaaccatgactctcgtctctcacaggtggcgacacctctgggagcatctccaggtcttcg |
30076898 |
T |
|
| Q |
126 |
a |
126 |
Q |
| |
|
| |
|
|
| T |
30076899 |
a |
30076899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 11299437 - 11299361
Alignment:
| Q |
8 |
ctaccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctc |
84 |
Q |
| |
|
||||||||||| | |||||||| || ||||||||||||||||||||| |||| || ||||| ||||||| |||| |
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|
| T |
11299437 |
ctaccagactctgtactctgccacatcttctccttcctcccaaccaaaaccaccatccaaacaacccctctcatctc |
11299361 |
T |
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