View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5199_low_1 (Length: 553)

Name: NF5199_low_1
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5199_low_1
NF5199_low_1
[»] chr3 (12 HSPs)
chr3 (19-541)||(36320509-36321035)
chr3 (170-414)||(36333309-36333556)
chr3 (257-467)||(36327431-36327641)
chr3 (162-460)||(36335967-36336262)
chr3 (29-450)||(36313206-36313624)
chr3 (257-516)||(36325512-36325777)
chr3 (19-218)||(36325813-36326012)
chr3 (27-123)||(36327772-36327868)
chr3 (29-123)||(36333601-36333695)
chr3 (279-386)||(30621491-30621598)
chr3 (401-454)||(36309078-36309131)
chr3 (33-61)||(36336363-36336391)
[»] chr5 (3 HSPs)
chr5 (271-382)||(16052979-16053090)
chr5 (28-130)||(16053231-16053333)
chr5 (260-321)||(42563569-42563630)


Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 541
Target Start/End: Complemental strand, 36321035 - 36320509
Alignment:
Q  19 ctttctaaataaattttacagtggcagtcacctacgttgcatgtggcttgtacgttgtttggggattacaaataaaggatttagtgaagctgtcagaaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36321035 ctttctaaataaattttacagtggcagtcacctacgttgcatgtggcttgtaagttgtttggggattacaaataaaggatttagtgaagctgtcagaaag 36320936  T
Q  119 cttccgcggttaagggaggttaacattatattttgcattatatctgaggtctctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaat 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36320935 cttccgcggttaggggaggttaacattatattttgcattatatctgaggtctctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaat 36320836  T
Q  219 atcatgcatggtaccccacgcgatcttgcaacccagagaaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggaca 318  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36320835 atcatgcatggtaccccacacgatcttgcaacccagagaaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggaca 36320736  T
Q  319 caatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacg 418  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36320735 caatctcagtgaacttggtgtgcgtgccattattgataaatgtcctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttgacg 36320636  T
Q  419 aaaaggtgcattgaacagatcaaggatttgcaactgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttgggga 518  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36320635 aaaaggtgcattgaccagatcaaggatttgcaactgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttgggga 36320536  T
Q  519 cg----atatgatatcagatgatgatg 541  Q
    ||    |||||||||||||||||||||    
T  36320535 cgatatatatgatatcagatgatgatg 36320509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 170 - 414
Target Start/End: Complemental strand, 36333556 - 36333309
Alignment:
Q  170 tctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaatatcatgcatggt---accccacgcgatcttgcaacccagagaaaatggcgc 266  Q
    ||||||||||  |||||||||||||||| |||| |||||||||||||||||||||  ||||   || | |||| ||||||| || | || ||||||||||    
T  36333556 tctcttgaagttcttggtcgatcttgccatcttttgaaattgcttaaatatcatgtgtggtggtactctacgcaatcttgcgactctgataaaatggcgc 36333457  T
Q  267 ttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||  ||||||||||||||| ||||| |    
T  36333456 ttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgtgctcgccattattgataaaggccctct 36333357  T
Q  367 tcttgaatctcttgacattagtgattgtcattatttgagtgaagattt 414  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||    
T  36333356 tcttgagtctcttgacattcgtgattgtcattatttgaatgaagattt 36333309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 257 - 467
Target Start/End: Complemental strand, 36327641 - 36327431
Alignment:
Q  257 aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata 356  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||||||| ||||||||||||||    
T  36327641 aaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgata 36327542  T
Q  357 aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtc 456  Q
      |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |    
T  36327541 gctgccctcttcttgagtctcttgacattagtgattgtcattatttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcc 36327442  T
Q  457 atatcgttata 467  Q
    |  ||||||||    
T  36327441 aagtcgttata 36327431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 162 - 460
Target Start/End: Complemental strand, 36336262 - 36335967
Alignment:
Q  162 ctgaggtctctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaatatcatgcatggtaccccacgcga-tcttgcaacccagagaaaa 260  Q
    |||||| | |||||||||||||||||||||||||||||||| |||||| |||| | ||| || |||| |    | |  || |||||  || | || ||||    
T  36336262 ctgaggccactcttgaagcccttggtcgatcttgccctcttttgaaatggcttcagtataattcatgct----cgcttgactcttgtgactctgataaaa 36336167  T
Q  261 tggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatg 360  Q
    ||||| ||  |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||  |||||||||||||||||    
T  36336166 tggcgtttcttattgctgaaacaatgcctggtctatgccatcttgatatgagaggacacaagctcactgaacttggcgtgctcgccattattgataaatg 36336067  T
Q  361 ccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtcatat 460  Q
    |||| ||||||||| |||||||||||||  ||||| | |||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||    
T  36336066 ccctcttcttgaatatcttgacattagtttttgtcttaatttgaatgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccatat 36335967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 29 - 450
Target Start/End: Complemental strand, 36313624 - 36313206
Alignment:
Q  29 aaattttacagtggcagtcacctacgttgcatgtggcttgtacgttgtttggggattacaaataaaggatttagtgaagctgtcagaaagcttccgcggt 128  Q
    ||||||||||||||||| |||||| || ||||| ||||||||  ||| | | |||||||| || ||||||||||||||||||| ||||||||||||||||    
T  36313624 aaattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggt 36313525  T
Q  129 taagggaggttaacattatattttgcattatatctgaggtctctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaatatc---atgc 225  Q
    |   | |||||   |||  |  |  |    || |||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||| |    || |    
T  36313524 tggagaaggttgtaatttcacatcactacctaactgatgtctctcttgaagcccttggtcgatcatgccctcttttgaaatcgcttaaatttgtaaattc 36313425  T
Q  226 atggtaccccacgcgatcttgcaacccagagaaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctc 325  Q
    | |||   |      ||||||  || | || |||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||    
T  36313424 aaggtttac------atcttgtgactctgataaaacggcacttgttattgctgaaacaatgcctggtctacgccatcttgatatgaaaggacacaagctc 36313331  T
Q  326 agtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggt 425  Q
    | ||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||| |||   |||||| |    
T  36313330 actgaacttggtgtgctcgccattattgataaatgccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaaggtttggagaaaagct 36313231  T
Q  426 gcattgaacagatcaaggatttgca 450  Q
    ||||||| ||||| || ||||||||    
T  36313230 gcattgatcagattaatgatttgca 36313206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 257 - 516
Target Start/End: Complemental strand, 36325777 - 36325512
Alignment:
Q  257 aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata 356  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  ||||| |||||||    
T  36325777 aaaatggcttttgttattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcagtgaacttcgtgtgctcgccataattgata 36325678  T
Q  357 aatgccctgttcttgaatctcttgacattagtgattg----tcattatttga--gtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgca 450  Q
    |||||||| |||||||||||||||||||||||| |||    ||||| | |||   |||||||||    ||||| ||||| ||  ||||||| ||||||||    
T  36325677 aatgccctcttcttgaatctcttgacattagtgtttgtctttcattgtatgaagatgaagatttgcataaaagttgcatcgacaagatcaatgatttgca 36325578  T
Q  451 actgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttggg 516  Q
    |||| ||||| ||||||  | ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  36325577 actgacatattgttatacttataaaccaatgagacaactaatatgacgatcatgcttctttttggg 36325512  T

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Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 36326012 - 36325813
Alignment:
Q  19 ctttctaaataaattttacagtggcagtcacctacgttgcatgtggcttgtacgttgtttggggattacaaataaaggatttagtgaagctgtcagaaag 118  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||||||  ||||| |||||| |||||||||||||||||||||||  | ||||||    
T  36326012 ctttttaaataaattttacagtggcagtcacctactttgcatgcggcttgtaaattgttgggggatgacaaataaaggatttagtgaagccttgagaaag 36325913  T
Q  119 cttccgcggttaagggaggttaacattatattttgcattatatctgaggtctctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaat 218  Q
    ||||||| ||||  | ||||| |||||  |  ||    | || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36325912 cttccgctgttagagaaggttgacatttcacattcttatctaactgaggtctctcttgaagcccttggtcgatcttgccctcttttgaaatcgcttaaat 36325813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 36327868 - 36327772
Alignment:
Q  27 ataaattttacagtggcagtcacctacgttgcatgtggcttgtacgttgtttggggattacaaataaaggatttagtgaagctgtcagaaagcttcc 123  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||  ||| | |  ||||||| || ||||||||| ||||||  | |||||||||||    
T  36327868 ataaattttacagtggcagtcacctactttgcatggggcttgtaaattgctcgaagattacagatgaaggatttactgaagccatgagaaagcttcc 36327772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 36333695 - 36333601
Alignment:
Q  29 aaattttacagtggcagtcacctacgttgcatgtggcttgtacgttgtttggggattacaaataaaggatttagtgaagctgtcagaaagcttcc 123  Q
    ||||||| |||||||||||| |||||||||||| ||||||||  |||||    ||||||| ||||||||||| || ||||  | |||||||||||    
T  36333695 aaattttgcagtggcagtcagctacgttgcatgcggcttgtaaattgttgtttgattacagataaaggatttggtaaagccatgagaaagcttcc 36333601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 30621598 - 30621491
Alignment:
Q  279 aaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctct 378  Q
    |||| |||||||| ||| |||||||||||||  | ||| ||  |||||||||| ||||  ||| ||| ||| |||||  ||||||| |||||||||||||    
T  30621598 aaacaatgcctgggctacgccatcttgatattcatggaaaccctctcagtgaagttgggttgcttgctattcttgatggatgccctcttcttgaatctct 30621499  T
Q  379 tgacatta 386  Q
     |||||||    
T  30621498 cgacatta 30621491  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 36309131 - 36309078
Alignment:
Q  401 ttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactg 454  Q
    |||||||||  ||| | ||||||||||||||| |||||||| ||||||||||||    
T  36309131 ttgagtgaaagtttgaagaaaaggtgcattgatcagatcaatgatttgcaactg 36309078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 36336391 - 36336363
Alignment:
Q  33 tttacagtggcagtcacctacgttgcatg 61  Q
    |||||||||||||||||||||||||||||    
T  36336391 tttacagtggcagtcacctacgttgcatg 36336363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 16053090 - 16052979
Alignment:
Q  271 tattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttctt 370  Q
    ||||||||| |||||| ||  ||||||| |||||||||| || ||| |||| |||| | |   |||| |||  |||||| |||||||||||||| |||||    
T  16053090 tattgctgatacgatgactaatctatgctatcttgatatcaagggagacaacctcactaatgatggtttgctcgccattcttgataaatgcccttttctt 16052991  T
Q  371 gaatctcttgac 382  Q
    ||||||||||||    
T  16052990 gaatctcttgac 16052979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 16053333 - 16053231
Alignment:
Q  28 taaattttacagtggcagtcacctacgttgcatgtggcttgtacgttgtttggggattacaaataaaggatttagtgaagctgtcagaaagcttccgcgg 127  Q
    ||||||||||||||||||||||||||||| |||| || |||||  ||| |  |  ||| || |  ||||||||||||||||||| || |||||||||| |    
T  16053333 taaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcagaagaaggatttagtgaagctgtgaggaagcttccgctg 16053234  T
Q  128 tta 130  Q
    |||    
T  16053233 tta 16053231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 42563630 - 42563569
Alignment:
Q  260 atggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaa 321  Q
    |||||| ||| ||| ||||||| |||| ||||||| |||||||||||||| || ||||||||    
T  42563630 atggcgtttgttatcgctgaaatgatgtctggtctgtgccatcttgatatcaatggacacaa 42563569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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