View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5199_low_2 (Length: 465)

Name: NF5199_low_2
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5199_low_2
NF5199_low_2
[»] scaffold0790 (2 HSPs)
scaffold0790 (211-427)||(620-826)
scaffold0790 (15-76)||(998-1059)
[»] chr5 (1 HSPs)
chr5 (374-447)||(24428597-24428670)
[»] chr1 (1 HSPs)
chr1 (371-402)||(36938052-36938083)
[»] chr6 (1 HSPs)
chr6 (371-403)||(29017958-29017990)
[»] chr4 (1 HSPs)
chr4 (374-402)||(46899888-46899916)
[»] chr3 (1 HSPs)
chr3 (366-402)||(44589419-44589455)


Alignment Details
Target: scaffold0790 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 427
Target Start/End: Complemental strand, 826 - 620
Alignment:
Q  211 taatttgaaaagctttcagcgaacttaaatgtgctccgatgttataaaatactggttatagcataactatagcgtggcggaatttgaacaaattgacatt 310  Q
    |||||||||||||||||| | ||||||||||| ||||  |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||     
T  826 taatttgaaaagctttcaacaaacttaaatgtactccagtgttataaaatactggctatagcaaaactatagcgtggcgcaatttgaacaaattaacat- 728  T
Q  311 attcggcaacacgctaatttgtactaagtgttatcaaatagcagcttaacgt-aaaaataagctattttctgtgatccacaattgacaacactaaaaaat 409  Q
           || ||||||||  |||| |||||||||||||   |||| |||  | || ||| | ||||||||||||||| || |||||||||||||||||||    
T  727 -------aatacgctaatcagtacaaagtgttatcaaa---cagcataatttgaacaatcaactattttctgtgatcgacgattgacaacactaaaaaat 638  T
Q  410 ccccaaaatcgtaaaaat 427  Q
    ||| ||| ||||||||||    
T  637 cccaaaattcgtaaaaat 620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 1059 - 998
Alignment:
Q  15 tcacaacaaaatttaccttcttttcttcctttttatttaattaggcttcaggggaacaaaga 76  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  1059 tcacaacaaaatttaccttattttcttcctttttatttaattatggttcaggggaacaaaga 998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 24428670 - 24428597
Alignment:
Q  374 attttctgtgatccacaattgacaacactaaaaaatccccaaaatcgtaaaaatcaatctccctatggcatagt 447  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  24428670 attttctgtgatccacaattgacaacactaaaaattccccaaaatcgtaaaaatcaatctccctatagcatagt 24428597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 402
Target Start/End: Original strand, 36938052 - 36938083
Alignment:
Q  371 gctattttctgtgatccacaattgacaacact 402  Q
    ||||||||||||||||||||||||||||||||    
T  36938052 gctattttctgtgatccacaattgacaacact 36938083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 29017990 - 29017958
Alignment:
Q  371 gctattttctgtgatccacaattgacaacacta 403  Q
    ||||||||||| |||||||||||||||||||||    
T  29017990 gctattttctgcgatccacaattgacaacacta 29017958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 46899916 - 46899888
Alignment:
Q  374 attttctgtgatccacaattgacaacact 402  Q
    |||||||||||||||||||||||||||||    
T  46899916 attttctgtgatccacaattgacaacact 46899888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 44589455 - 44589419
Alignment:
Q  366 aataagctattttctgtgatccacaattgacaacact 402  Q
    ||||||||||||||  |||||||||||||||||||||    
T  44589455 aataagctattttccatgatccacaattgacaacact 44589419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University