View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5199_low_3 (Length: 461)

Name: NF5199_low_3
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5199_low_3
NF5199_low_3
[»] chr5 (3 HSPs)
chr5 (10-359)||(6381450-6381797)
chr5 (329-360)||(6380983-6381014)
chr5 (195-265)||(3135922-3135992)
[»] chr3 (8 HSPs)
chr3 (195-428)||(46187695-46187936)
chr3 (196-299)||(45529392-45529495)
chr3 (196-304)||(55125267-55125375)
chr3 (196-243)||(46187148-46187195)
chr3 (329-360)||(46187285-46187316)
chr3 (194-244)||(13810598-13810648)
chr3 (196-242)||(48219275-48219321)
chr3 (192-244)||(37373961-37374013)
[»] chr1 (5 HSPs)
chr1 (244-428)||(29148752-29148939)
chr1 (195-275)||(13361602-13361682)
chr1 (329-359)||(29148298-29148328)
chr1 (239-284)||(9429808-9429853)
chr1 (195-299)||(11032164-11032268)
[»] chr4 (9 HSPs)
chr4 (207-256)||(37114584-37114633)
chr4 (208-304)||(6680282-6680378)
chr4 (194-299)||(7988228-7988333)
chr4 (193-297)||(50056906-50057010)
chr4 (196-299)||(43079160-43079263)
chr4 (189-243)||(39844889-39844943)
chr4 (194-244)||(52720595-52720645)
chr4 (195-244)||(25370430-25370479)
chr4 (195-244)||(52597749-52597798)
[»] scaffold0455 (1 HSPs)
scaffold0455 (312-400)||(12436-12523)
[»] chr6 (1 HSPs)
chr6 (312-400)||(28134400-28134487)
[»] scaffold0181 (2 HSPs)
scaffold0181 (189-240)||(15071-15122)
scaffold0181 (195-254)||(15901-15960)
[»] chr7 (4 HSPs)
chr7 (196-304)||(12732780-12732888)
chr7 (208-302)||(12732259-12732353)
chr7 (226-299)||(27600040-27600113)
chr7 (194-251)||(48881053-48881110)
[»] chr8 (2 HSPs)
chr8 (226-304)||(42915750-42915828)
chr8 (208-256)||(37562307-37562355)
[»] chr2 (1 HSPs)
chr2 (195-244)||(28223787-28223836)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 6381797 - 6381450
Alignment:
Q  10 attatactatgcattgaataaagtatggaacatggaagcaaatggatgctaacacaacacttttatgactttttgtcttttacatacataagttgaattt 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6381797 attatactacgcattgaataaagtatggaacatggaagcaaatggatgctaacacaacacttttatgactttttgtcttttacatacataagttgaattt 6381698  T
Q  110 ggattcatataatcataagctctctcattcattcattaccgtagtaacttcatagctaagaattaatattcaagacaaacaaataaggtggcattttaca 209  Q
    ||||||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6381697 ggattcatataatcataagctctctcattcact----accgtagtaacttcatagctaagaattaatattcaagacaaacaaataaggtggcatttcaca 6381602  T
Q  210 tgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctcaacattaga--nnn 307  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||         
T  6381601 tgggaaaggataaaacttttccaccataggaaagtcaattttaaccactagattaagcaaagaacattgtcttatcatagactctcaatattagattttt 6381502  T
Q  308 nnnncacaccacctgccattctctctcctccatgtctctctcacccaccacc 359  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6381501 ttttcacaccacctgccattctctctcctccatgtctctctcacccaccacc 6381450  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 6380983 - 6381014
Alignment:
Q  329 tctctcctccatgtctctctcacccaccacca 360  Q
    ||||||||||||||||||||||||||||||||    
T  6380983 tctctcctccatgtctctctcacccaccacca 6381014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 3135922 - 3135992
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaa 265  Q
    ||||||||||| ||||||||| | ||||||| ||| |||||| |||||||  |||||| |||||| |||||    
T  3135922 aggtggcatttcacatgggaaggtataaaaccttcccaccatgggaaagtttattttagccactagattaa 3135992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 195 - 428
Target Start/End: Complemental strand, 46187936 - 46187695
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactct 294  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46187936 aggtggcatttcacatgggaaaggataaaactttctcaccatgggagagtcaattttaaccactagattaagcaaagaacattgtcttatcatagactct 46187837  T
Q  295 caacatt-agannnnnnncacaccacctgccattctctctcctccatgtctctct-------cacccaccaccattaccagcaactctcctgtcgacaaa 386  Q
    ||||||| |         |||||||| |||||||||| ||| |||||||||||||       |||||||||||| ||||||||||||| ||||||| |||    
T  46187836 caacattgaatttttttccacaccacttgccattctccctcttccatgtctctctcacccaccacccaccaccactaccagcaactcttctgtcgaaaaa 46187737  T
Q  387 tccatttgtgaagccacacacatcatttataggattcacttc 428  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  46187736 tccatttgtgaagccacacacatcatttatagaattcacttc 46187695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 45529495 - 45529392
Alignment:
Q  196 ggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctc 295  Q
    |||||||||| |||| |||||| |||||| |||| | | || ||||||| ||||||||||||||||| ||| |||||||||| | |||||||||||||||    
T  45529495 ggtggcatttaacataggaaagcataaaagtttcccgctatgggaaagttaattttaaccactaaatcaagtaaagaacattatgttatcatagactctc 45529396  T
Q  296 aaca 299  Q
    ||||    
T  45529395 aaca 45529392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 55125375 - 55125267
Alignment:
Q  196 ggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctc 295  Q
    ||||||||||  ||||| || ||| || | |||| |||||||| ||||| ||||||| ||| || |||||| |||||||||||||||||  || ||||||    
T  55125375 ggtggcatttagcatggaaatggacaatagtttcccaccatagaaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 55125276  T
Q  296 aacattaga 304  Q
    |||| ||||    
T  55125275 aacactaga 55125267  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 46187148 - 46187195
Alignment:
Q  196 ggtggcattttacatgggaaaggataaaactttctcaccataggaaag 243  Q
    |||||||||| |||||||||||  |||||||||| |||||||||||||    
T  46187148 ggtggcatttcacatgggaaagtgtaaaactttcccaccataggaaag 46187195  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 46187285 - 46187316
Alignment:
Q  329 tctctcctccatgtctctctcacccaccacca 360  Q
    ||||||||||||||||||||||||||||||||    
T  46187285 tctctcctccatgtctctctcacccaccacca 46187316  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 13810648 - 13810598
Alignment:
Q  194 aaggtggcattttacatgggaaaggataaaactttctcaccataggaaagt 244  Q
    |||||| ||||| |||||||||||| |||||||||| ||| ||||||||||    
T  13810648 aaggtgacatttaacatgggaaagggtaaaactttcccacgataggaaagt 13810598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 48219321 - 48219275
Alignment:
Q  196 ggtggcattttacatgggaaaggataaaactttctcaccataggaaa 242  Q
    ||||||||||||||||||||||| |||  |||||||||||| |||||    
T  48219321 ggtggcattttacatgggaaaggttaattctttctcaccatgggaaa 48219275  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 37373961 - 37374013
Alignment:
Q  192 ataaggtggcattttacatgggaaaggataaaactttctcaccataggaaagt 244  Q
    ||||||||||||||||||||||||||| |||   |||| |||||| |||||||    
T  37373961 ataaggtggcattttacatgggaaaggttaatcttttcccaccatgggaaagt 37374013  T

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Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 244 - 428
Target Start/End: Complemental strand, 29148939 - 29148752
Alignment:
Q  244 tcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctcaacattagannnnnnn---cacaccacctgccattctctctcctccat 340  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |          |||||||||||||||||||||||||||||    
T  29148939 tcaattttaaccactagattaagcaaagaacattgtcttatcatagactctcaacattgaatttttttttccacaccacctgccattctctctcctccat 29148840  T
Q  341 gtctctctcacccaccaccattaccagcaactctcctgtcgacaaatccatttgtgaagccacacacatcatttataggattcacttc 428  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29148839 gtctctctcacccaccaccactaccggcaactctcctgtcgacaaatccatttgtgaagccacacacatcatttataggattcacttc 29148752  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 13361602 - 13361682
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaaca 275  Q
    ||||||||||| | || ||||||| |||||||||| |||||| ||||||| ||||| |||||| | || ||| ||||||||    
T  13361602 aggtggcatttaatataggaaagggtaaaactttcccaccatgggaaagttaatttgaaccaccagatcaagtaaagaaca 13361682  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 29148298 - 29148328
Alignment:
Q  329 tctctcctccatgtctctctcacccaccacc 359  Q
    |||||||||||||||||||||||||||||||    
T  29148298 tctctcctccatgtctctctcacccaccacc 29148328  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 9429808 - 9429853
Alignment:
Q  239 gaaagtcaattttaaccactaaattaagcaaagaacattgtcttat 284  Q
    |||||| ||||||| ||| ||||||||| |||||||||||||||||    
T  9429808 gaaagtaaattttatccattaaattaagtaaagaacattgtcttat 9429853  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 11032268 - 11032164
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactct 294  Q
    ||||||||||| ||||||||||||  || | |||| |||||| |||||||  | ||| |||| || |||||| || |||||   ||||||||| ||||||    
T  11032268 aggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaagtaatgaacacattcttatcatggactct 11032169  T
Q  295 caaca 299  Q
    |||||    
T  11032168 caaca 11032164  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 37114633 - 37114584
Alignment:
Q  207 acatgggaaaggataaaactttctcaccataggaaagtcaattttaacca 256  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  37114633 acatgggaaaggataaaactttcccaccataaaaaagtcaattttaacca 37114584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 6680378 - 6680282
Alignment:
Q  208 catgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctcaacattaga 304  Q
    |||||||||||  || | ||||||||||| ||||||| ||| || |||| || |||||| ||||||||| || |||||||||| |||||||| ||||    
T  6680378 catgggaaagggaaagagtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacactaga 6680282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 7988333 - 7988228
Alignment:
Q  194 aaggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactc 293  Q
    |||||||||||| ||||||||||||  ||  ||||||||||||||||||||   |||  |||| || |||||| || ||||||  | ||||||||| |||    
T  7988333 aaggtggcatttaacatgggaaagggaaatcctttctcaccataggaaagtttttttggaccattagattaagtaaggaacataatattatcatagtctc 7988234  T
Q  294 tcaaca 299  Q
    ||||||    
T  7988233 tcaaca 7988228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 50057010 - 50056906
Alignment:
Q  193 taaggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagact 292  Q
    ||||||| ||||| |||||||||| ||||| | |||| || |||  |||||| ||||| |||||||| || ||| |||||||  ||||||| | ||||||    
T  50057010 taaggtgacatttaacatgggaaatgataatattttcccatcatgagaaagttaatttgaaccactagatcaagtaaagaacgctgtcttaccgtagact 50056911  T
Q  293 ctcaa 297  Q
    |||||    
T  50056910 ctcaa 50056906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 43079160 - 43079263
Alignment:
Q  196 ggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctc 295  Q
    |||||||||| ||||||||||||| ||   |||  ||| || ||||||| ||||||| ||| || || ||| ||||||||| ||||||||||  ||||||    
T  43079160 ggtggcatttcacatgggaaaggacaatctttttccacaatgggaaagttaattttatccattagatcaagtaaagaacatagtcttatcatgcactctc 43079259  T
Q  296 aaca 299  Q
    ||||    
T  43079260 aaca 43079263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 39844889 - 39844943
Alignment:
Q  189 caaataaggtggcattttacatgggaaaggataaaactttctcaccataggaaag 243  Q
    ||||||||||||||||| ||||||||||||  ||  ||||| |||||||||||||    
T  39844889 caaataaggtggcatttcacatgggaaaggggaatcctttcccaccataggaaag 39844943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 52720595 - 52720645
Alignment:
Q  194 aaggtggcattttacatgggaaaggataaaactttctcaccataggaaagt 244  Q
    |||||||||||| ||||||||| | ||||||| ||| ||||||||||||||    
T  52720595 aaggtggcatttcacatgggaaggtataaaacattcccaccataggaaagt 52720645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 25370479 - 25370430
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagt 244  Q
    |||||||||||||||||||||||| |||  ||||| |||||| |||||||    
T  25370479 aggtggcattttacatgggaaaggttaatcctttcccaccatgggaaagt 25370430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 52597798 - 52597749
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagt 244  Q
    ||||||||||| |||||||||||| |||  |||| |||||||||||||||    
T  52597798 aggtggcatttcacatgggaaaggttaatcctttttcaccataggaaagt 52597749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 400
Target Start/End: Original strand, 12436 - 12523
Alignment:
Q  312 cacaccacctgccattctctctcctccatgtctctctcacccaccaccattaccagcaactctcctgtcgacaaatccatttgtgaagc 400  Q
    |||||||||  | |||||| ||||||||||||||||||| |||||||||  |||||||||| |||| || ||||||  |||||||||||    
T  12436 cacaccaccaactattctccctcctccatgtctctctca-ccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagc 12523  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 400
Target Start/End: Original strand, 28134400 - 28134487
Alignment:
Q  312 cacaccacctgccattctctctcctccatgtctctctcacccaccaccattaccagcaactctcctgtcgacaaatccatttgtgaagc 400  Q
    |||||||||  | |||||| ||||||||||||||||||| |||||||||  |||||||||| |||| || ||||||  |||||||||||    
T  28134400 cacaccaccaactattctccctcctccatgtctctctca-ccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagc 28134487  T

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Target: scaffold0181 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 15071 - 15122
Alignment:
Q  189 caaataaggtggcattttacatgggaaaggataaaactttctcaccatagga 240  Q
    ||||| ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  15071 caaatcaggtggcatttaacatgggaaagggtaaaactttcccaccatagga 15122  T

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Target: scaffold0181; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 15960 - 15901
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaac 254  Q
    ||||||||||| |||||||||||| |||||||||| ||| || ||||||| ||| |||||    
T  15960 aggtggcatttaacatgggaaagggtaaaactttcccactatgggaaagttaatattaac 15901  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 12732888 - 12732780
Alignment:
Q  196 ggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctc 295  Q
    ||||||||||  ||||| || ||| || | |||| ||||||  |||||| ||||||| ||| || |||||| |||||||||||||||||  || ||||||    
T  12732888 ggtggcatttagcatggaaatggacaatagtttcccaccatgagaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 12732789  T
Q  296 aacattaga 304  Q
    |||| ||||    
T  12732788 aacactaga 12732780  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 12732259 - 12732353
Alignment:
Q  208 catgggaaaggataaaactttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctcaacatta 302  Q
    |||||||||||  || | |||| |||||| ||||||| ||| || |||| || || | | ||||||||| || ||||||||||||||||||||||    
T  12732259 catgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaacatta 12732353  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 27600113 - 27600040
Alignment:
Q  226 tttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctcaaca 299  Q
    |||| |||||| ||||||| || ||| ||||||| |||||| || |||||   |||||||||||||||||||||    
T  27600113 tttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactctcaaca 27600040  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 48881110 - 48881053
Alignment:
Q  194 aaggtggcattttacatgggaaaggataaaactttctcaccataggaaagtcaatttt 251  Q
    ||||||||||||||||||| ||||| |||  ||||| |||||||||| ||| ||||||    
T  48881110 aaggtggcattttacatggaaaaggttaatcctttcccaccataggacagttaatttt 48881053  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 42915828 - 42915750
Alignment:
Q  226 tttctcaccataggaaagtcaattttaaccactaaattaagcaaagaacattgtcttatcatagactctcaacattaga 304  Q
    |||| ||||||||||||||  ||||| || | ||||||||  ||||||||| || |||||||||||||| |||| ||||    
T  42915828 tttcccaccataggaaagttgattttgactattaaattaaataaagaacatggtattatcatagactcttaacactaga 42915750  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 37562307 - 37562355
Alignment:
Q  208 catgggaaaggataaaactttctcaccataggaaagtcaattttaacca 256  Q
    |||||||||||| ||   |||| ||||||||||||||||||||||||||    
T  37562307 catgggaaaggagaattgtttcccaccataggaaagtcaattttaacca 37562355  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 28223787 - 28223836
Alignment:
Q  195 aggtggcattttacatgggaaaggataaaactttctcaccataggaaagt 244  Q
    ||||||||||| |||||||||||| |||  ||||| ||||||||||||||    
T  28223787 aggtggcatttcacatgggaaaggttaatcctttcccaccataggaaagt 28223836  T

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