View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5199_low_4 (Length: 344)
Name: NF5199_low_4
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 49309748 - 49309875
Alignment:
| Q |
201 |
gccacctaaggtggtacaagagtggtatgtccatctaaggtggtctacctatcagaactcttttttatcaaacgagacttgaaattgcaaaatctagctc |
300 |
Q |
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| T |
49309748 |
gccacctaaggtggtacaagagtggtatgtccatctaagggggtctacctatcagaactcttttttatcaaacgagacttgaaattgcaaaacctaactc |
49309847 |
T |
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| Q |
301 |
ggtctagtctaatcttactcttagtaat |
328 |
Q |
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| T |
49309848 |
gatctagtctaatcttactcctagtaat |
49309875 |
T |
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Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 49309554 - 49309676
Alignment:
| Q |
8 |
gagaagaaagagagagttaagttggagcaatttgagctgggggcggagggtttggtcggcgacggtggtggtggtgtggaagggtggatggcggtggaga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
49309554 |
gagaagaaagagagagttaagttggagcaatttgagctgggggcggagggtttggtcggcggtggtggtggtggtatggaagggtggatggcggtggaga |
49309653 |
T |
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| Q |
108 |
gaaaaagaagagagatatgctca |
130 |
Q |
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| T |
49309654 |
gaaaaggaagagagatatgctca |
49309676 |
T |
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