View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5199_low_7 (Length: 230)
Name: NF5199_low_7
Description: NF5199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5199_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 24725372 - 24725574
Alignment:
| Q |
18 |
gatactgctacatttccatttcatcttcagaagaagaggtactactattctcactctattcaccatcactttttatattcacattctatatcgataccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24725372 |
gatactgctacatttccatttcatcttcagaagaagaggtactactattctcactctattcaccatcactttttatattcacattctatatcgataccat |
24725471 |
T |
|
| Q |
118 |
tcccgataatggaatcctttaattaaagttacaagttacgagattgaaaactttgtnnnnnnnntaacttacgagattgaaaatactttataattttctt |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
24725472 |
taccgataatggaatcctttaattaaagttacaagttacgagattgaaaactttgtaaaaaatataacttacgagattgaaaatactttataattttgtt |
24725571 |
T |
|
| Q |
218 |
gga |
220 |
Q |
| |
|
||| |
|
|
| T |
24725572 |
gga |
24725574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 8837862 - 8837825
Alignment:
| Q |
81 |
catcactttttatattcacattctatatcgataccatt |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
8837862 |
catcacttttcatattcacattctatatctataccatt |
8837825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University