View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5200-Insertion-2 (Length: 863)
Name: NF5200-Insertion-2
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5200-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 840; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 8 - 863
Target Start/End: Original strand, 2861613 - 2862468
Alignment:
| Q |
8 |
ttcagctctctcagggactccagttcgccttctctgctattaaatatattcgctatcaacaagatttagcttctacttcagctaaaaccgatacagtccg |
107 |
Q |
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| T |
2861613 |
ttcagctctctcagggactccagttcgccttctctgctattaaatatattcgctatcaacaagatttagcttctacttcagctaaaaccgatacagtccg |
2861712 |
T |
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| Q |
108 |
tccttggtttagtttggacggattggctattgctcttgttgccgttctgtttcttgtcctcaccactggtgctggtgaggacaaacataattcagaacga |
207 |
Q |
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| T |
2861713 |
tccttggtttagtttggacggattggctattgctcttgttgccgttctgtttcttgtcctcaccactggtgctggtgaggacaaacataattcagaacga |
2861812 |
T |
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| Q |
208 |
caacaacaacatggagaagaagaattagactctgttgttgttcggagaaataaaattaaccaaaggttgaagattttatcgatgataccttcggctttga |
307 |
Q |
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| T |
2861813 |
caacaacaacatggagaagaagaattagactctgttgttgttcggagaaataaaattaaccaaaggttgaagattttatcgatgataccttcggctttga |
2861912 |
T |
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| Q |
308 |
ttgtgtttttgtttggattgttattgtgttttattcgtgatccttcgatttttcatgatttgaaatttgggccgtcgaagattaagcttgtgagaattac |
407 |
Q |
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| T |
2861913 |
ttgtgtttttgtttggattgttattgtgttttattcgtgatccttcgatttttcatgatttgaaatttgggccgtcgaagattaagcttgtgagaattac |
2862012 |
T |
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| Q |
408 |
atgggatgattttaaagttggatttgttagagctgcaattccacaaattcctttatccattttgaattcagtcattgcggtttgtaaactgtccggagat |
507 |
Q |
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| T |
2862013 |
atgggatgattttaaagttggatttgttagagctgcaattccacaaattcctttatcgattttgaattcagtaattgcggtttgtaaactgtccggagat |
2862112 |
T |
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| Q |
508 |
ttatttccggacagagaagcttctgctatgaaggtttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatg |
607 |
Q |
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| T |
2862113 |
ttatttcccgacagagaagcttctgctatgaaggtttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatg |
2862212 |
T |
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| Q |
608 |
gagctggtggattggctggtcagtataggtttggaggtaggagtggtgcttctgttgtttttcttggggttggtaaattgttgattgctttggtttttgg |
707 |
Q |
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| T |
2862213 |
gagctggtggattggctggtcagtataggtttggaggtaggagtggtgcttctgttgtttttcttggggttggtaaattgttgattgctttggtttttgg |
2862312 |
T |
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| Q |
708 |
gaactcttttggaagaattttgggtcagtttcctattggcatattaggggtgttgcttttgtttgctgggattgagttggctatggcttctaaagatatg |
807 |
Q |
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| T |
2862313 |
gaactcttttggaagaattttgggtcagtttcctattggcatattaggggtgttgcttttgtttgctgggattgaattggctatggcttctaaagatatg |
2862412 |
T |
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| Q |
808 |
aatagtaaacaagagtcttttattatgtttgtttgtgctgctgtttctttgactgg |
863 |
Q |
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| T |
2862413 |
aatagtaaacaagagtcttttattatgtttgtttgtgctgctgtttctttgactgg |
2862468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 653
Target Start/End: Original strand, 1875682 - 1875793
Alignment:
| Q |
542 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
641 |
Q |
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||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| | || || ||||||| ||||| |
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| T |
1875682 |
tttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttgg |
1875781 |
T |
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| Q |
642 |
aggtaggagtgg |
653 |
Q |
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| T |
1875782 |
tggaaggagtgg |
1875793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 653
Target Start/End: Original strand, 1808078 - 1808189
Alignment:
| Q |
542 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
641 |
Q |
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| T |
1808078 |
tttcagtgacagttggactaatgaatttagttggttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttgg |
1808177 |
T |
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| Q |
642 |
aggtaggagtgg |
653 |
Q |
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| T |
1808178 |
aggaaggagtgg |
1808189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 733 - 855
Target Start/End: Complemental strand, 49993100 - 49992978
Alignment:
| Q |
733 |
cagtttcctattggcatattaggggtgttgcttttgtttgctgggattgagttggctatggcttctaaagatatgaatagtaaacaagagtcttttatta |
832 |
Q |
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||||||||| | || || |||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||| ||| | || |||||| ||| |
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| T |
49993100 |
cagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgtta |
49993001 |
T |
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| Q |
833 |
tgtttgtttgtgctgctgtttct |
855 |
Q |
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| T |
49993000 |
tgcttctttgtactgctgtttct |
49992978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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