View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5200-Insertion-3 (Length: 820)

Name: NF5200-Insertion-3
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5200-Insertion-3
NF5200-Insertion-3
[»] chr3 (16 HSPs)
chr3 (119-608)||(5382983-5383472)
chr3 (119-458)||(4100027-4100367)
chr3 (10-576)||(13722733-13723294)
chr3 (8-372)||(6806454-6806828)
chr3 (678-816)||(5382735-5382875)
chr3 (678-816)||(13722508-13722647)
chr3 (8-118)||(4099625-4099736)
chr3 (119-242)||(5378014-5378136)
chr3 (8-242)||(13719155-13719399)
chr3 (123-245)||(4099735-4099855)
chr3 (20-242)||(2185260-2185500)
chr3 (97-240)||(23619338-23619481)
chr3 (20-73)||(26137128-26137182)
chr3 (596-671)||(5382852-5382927)
chr3 (624-671)||(13722624-13722671)
chr3 (20-101)||(23619238-23619324)
[»] chr1 (19 HSPs)
chr1 (8-608)||(42375175-42375785)
chr1 (119-608)||(23200323-23200807)
chr1 (119-608)||(14476554-14477028)
chr1 (8-509)||(2796738-2797249)
chr1 (626-816)||(23200893-23201085)
chr1 (8-318)||(21010320-21010650)
chr1 (596-816)||(14476276-14476498)
chr1 (679-816)||(42375894-42376033)
chr1 (120-243)||(14471543-14471664)
chr1 (8-242)||(2790575-2790819)
chr1 (119-242)||(23202692-23202813)
chr1 (119-242)||(39170115-39170236)
chr1 (195-329)||(34427175-34427308)
chr1 (20-99)||(24567504-24567584)
chr1 (466-549)||(24567624-24567707)
chr1 (20-101)||(394922-395004)
chr1 (596-671)||(42375841-42375916)
chr1 (207-242)||(42377395-42377430)
chr1 (99-229)||(14632666-14632796)
[»] scaffold0015 (3 HSPs)
scaffold0015 (8-608)||(29173-29771)
scaffold0015 (678-816)||(28933-29073)
scaffold0015 (8-242)||(24211-24455)
[»] chr8 (6 HSPs)
chr8 (8-608)||(86318-86916)
chr8 (8-329)||(19802789-19803120)
chr8 (678-816)||(87016-87156)
chr8 (8-244)||(91635-91881)
chr8 (8-242)||(29010782-29011026)
chr8 (20-97)||(26491902-26491980)
[»] chr6 (6 HSPs)
chr6 (121-559)||(32703808-32704244)
chr6 (8-587)||(16777469-16778046)
chr6 (596-815)||(16777172-16777392)
chr6 (8-242)||(32708060-32708304)
chr6 (8-242)||(16772466-16772710)
chr6 (8-43)||(32703692-32703727)
[»] chr7 (12 HSPs)
chr7 (8-608)||(13160389-13161005)
chr7 (596-816)||(11711790-11712010)
chr7 (337-559)||(11711490-11711700)
chr7 (101-242)||(13166948-13167091)
chr7 (102-247)||(11716542-11716687)
chr7 (149-264)||(11711346-11711459)
chr7 (212-321)||(34379141-34379250)
chr7 (8-73)||(11708922-11708988)
chr7 (649-800)||(13161114-13161265)
chr7 (8-73)||(11716438-11716504)
chr7 (8-54)||(13166856-13166902)
chr7 (115-161)||(34379055-34379101)
[»] chr5 (5 HSPs)
chr5 (24-239)||(24092098-24092314)
chr5 (8-242)||(12842782-12843026)
chr5 (120-242)||(37022666-37022786)
chr5 (8-73)||(37023105-37023171)
chr5 (182-243)||(656803-656863)
[»] chr4 (8 HSPs)
chr4 (119-242)||(6746689-6746812)
chr4 (473-608)||(14023913-14024048)
chr4 (102-242)||(14026968-14027108)
chr4 (631-726)||(14024112-14024207)
chr4 (118-242)||(8724699-8724822)
chr4 (8-73)||(14026862-14026930)
chr4 (188-242)||(37537890-37537944)
chr4 (678-774)||(14024129-14024228)
[»] chr2 (5 HSPs)
chr2 (8-118)||(36314722-36314834)
chr2 (102-242)||(20925392-20925531)
chr2 (26-77)||(20925565-20925617)
chr2 (8-209)||(37758873-37759082)
chr2 (132-186)||(36313829-36313883)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 119 - 608
Target Start/End: Complemental strand, 5383472 - 5382983
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaactt-gaaagatataaaaacttgagttttctcatttgagagttagagagt 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||| || |||| |||||||| ||||||||| |||||||||||||||||||||    
T  5383472 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaattttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagt 5383375  T
Q  218 ggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttct 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5383374 ggattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgatttttct 5383275  T
Q  318 aagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgccattgtgttcggaaggccgaaa 417  Q
    |||| |||||||   |   ||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||    
T  5383274 aaggctgttcttgaagaaaaagagctgccaccttcgaaactctactttgcggccattttttcgcaaaactaacgccgccattgcgttcggaaggccgaaa 5383175  T
Q  418 aaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||| ||||||||||| | ||||||    
T  5383174 aaccttggactggaggtttttgtcaccaacggagcctccacgagccggcaaacgactcgccggagttctcgtcggaccaccacccgccgccactaaccac 5383075  T
Q  518 caccggaagtctagaggttgaagacgatcagtcagcagccacatcatctg-ccacgtgtcgcttccaaccagtagctagctgccacgtgtca 608  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||||| || ||  | |||||||||||    
T  5383074 caccggaagtctagaggttgaagacgaccagtcagcagccacatcacctgcccacgtgtcacttccaaccaataacttaccgccacgtgtca 5382983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 119 - 458
Target Start/End: Original strand, 4100027 - 4100367
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaa--cttgagttttctcatttgagagttagagag 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||  ||||||||| ||||||||||||||||||||    
T  4100027 ggcctctaggattactataaataaggctatttccttcatgtattatcacaatttgaaatatataaaaaaacttgagttt-ctcatttgagagttagagag 4100125  T
Q  217 tggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttc 316  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4100126 tggattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacgaaaagtttgagttttc 4100225  T
Q  317 taagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgccattgtgttcggaaggccgaa 416  Q
    |||||||||| ||   |   ||||||||||||| | ||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||    
T  4100226 taagggtgttgttgaagaaaaagagctgccacctttgaaactctactttgcggccattttttcgcaaaactaacgccgccattgcgttcggaaggccgaa 4100325  T
Q  417 aaaccttggactggaggtttttgtcaccaacggagcctccac 458  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  4100326 aaaccttggattggaggtttttgtcaccaacagagcctccac 4100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 10 - 576
Target Start/End: Complemental strand, 13723294 - 13722733
Alignment:
Q  10 tagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttcca 99  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||  ||    
T  13723294 tagctttccaattccaccaccctactatttacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatca 13723195  T
Q  100 ttactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttc 197  Q
      ||||||||| |||||||  ||||||||||||| |||||||||||||   ||||||||||||||  ||||| |||||| |||||||| ||||||||| |    
T  13723194 gcactatttcagctaccatatggcctctaggattgctataaataaggctcattccttcatgtattaccacaatttgaaatatataaaa-cttgagttt-c 13723097  T
Q  198 tcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatca 297  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13723096 tcatttgatagttagagagtggattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccgaagttgagtttgagtgaaagaatca 13722997  T
Q  298 acggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgcca 397  Q
    |||||||||||||||||| ||||||||||||        |||| |||||||| ||||||| ||||||||||||||       ||||||||||| ||||||    
T  13722996 acggaaagtttgagttttttaagggtgttctggaaaaaaaagaactgccaccttcgaaacactactttgcggccattttttcgcaaaactaacaccgcca 13722897  T
Q  398 ttgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggaccat 497  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||             ||||||||||||     
T  13722896 ttgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg------------actcgccggaccac 13722809  T
Q  498 cacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtc 576  Q
    |||||||| || | ||||||  |||   ||||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  13722808 cacccgcctccactaaccactgccg---gtctagaggttgaagacgaccagtcagcagccgcatcagctgccacgtgtc 13722733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 6806828 - 6806454
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  6806828 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattaa 6806729  T
Q  98 cattactatttcaactaccatg--gcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||   |||||||||||| ||||||||||||  | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  6806728 cagcactatttcagctaccatatagcctctaggattgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 6806630  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6806629 -ctcatttgagagttagagagtggattctctcttggtttctgagccatattggcattagagcaaggttccaaatccggagttgagtttgagtgaaagaat 6806531  T
Q  296 caacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggcca 372  Q
    |||||||||||||||||||||||| |||||||||   |   ||||||||||||| ||||||||||||||||||||||    
T  6806530 caacggaaagtttgagttttctaatggtgttcttgaagaaaaagagctgccaccttcgaaactctactttgcggcca 6806454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 678 - 816
Target Start/End: Complemental strand, 5382875 - 5382735
Alignment:
Q  678 gaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttgaa-ttgcaaatc 775  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||||||     
T  5382875 gaaattacaaattttccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcagaattatccctgtactttttgaaattgcaaatt 5382776  T
Q  776 tgcccctattctttctggaattacaattttacccttgttca 816  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5382775 tgcccctattctttctggaattacaattttacccttgttca 5382735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 678 - 816
Target Start/End: Complemental strand, 13722647 - 13722508
Alignment:
Q  678 gaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttg-aattgcaaatc 775  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||| ||||||||||     
T  13722647 gaaattacaaatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcataattacccttgtactttttgaaattgcaaatt 13722548  T
Q  776 tgcccctattctttctggaattacaattttacccttgttca 816  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  13722547 tg-ccctattctttctggaattacaattttacccttgttca 13722508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 4099625 - 4099736
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttccattactat 106  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||    
T  4099625 gctagctttcctattccaccaccctactattgacaataaggccaacaagccaccatttttgacattttctatttttactagattgtgtttccattattat 4099724  T
Q  107 ttcaactaccat 118  Q
    ||||||||||||    
T  4099725 ttcaactaccat 4099736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 5378136 - 5378014
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaactt-gaaagatataaaaacttgagttttctcatttgagagttagagagt 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||| || |||| |||||||| ||||||||| |||||||||||||||||||||    
T  5378136 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaattttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagt 5378039  T
Q  218 ggattctctcttggcttctgagcca 242  Q
    |||||||||||||| ||||||||||    
T  5378038 ggattctctcttggtttctgagcca 5378014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 13719399 - 13719155
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  13719399 gctagctttccaattccaccaccttactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 13719300  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  |||||||| |||| ||||||||||||| | ||  ||||||||||  ||||| |||||| |||||||| |||||||||    
T  13719299 caacactatttcagctaccatatggcctctatgattgctataaataaggccacttttttcatgtattaccacaatttgaaatatataaaa-cttgagttt 13719201  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13719200 -ctcatttgagagttagagagtggattctctcttggtttctgagcca 13719155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 4099855 - 4099735
Alignment:
Q  123 tctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtggatt 222  Q
    ||||||||||||||||||||||  |||| |||||||||| ||||||| |||||| |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  4099855 tctaggattactataaataaggtcattttcttcatgtatcctcacaatttgaaatatataaaa-cttgagttt-ctcttttgagagttagagagtggatt 4099758  T
Q  223 ctctcttggcttctgagccatat 245  Q
    ||||||||| || ||||||||||    
T  4099757 ctctcttggtttatgagccatat 4099735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 2185260 - 2185500
Alignment:
Q  20 attccaccaccctactattgacaataaggccaacaagcca-catgtttgacattttctatttttactagattgtatttccatt----------------a 102  Q
    ||||||||||||||||||||||  |||||| |||||| || ||||||||||  | |||||||||| |||||||||||||||||                |    
T  2185260 attccaccaccctactattgactttaaggcaaacaagtcatcatgtttgacgatatctatttttaatagattgtatttccattggtattaattactatta 2185359  T
Q  103 ctatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctca 200  Q
     ||||||| |||| ||  ||||||||||||| ||||||| ||||| | |||||||||||||  |||  | |||||| |||| |||||||||| |||||||    
T  2185360 ttatttcatctacaatctggcctctaggattgctataaacaaggccacttccttcatgtatcatcatcaattgaaatatatgaaaacttgag-tttctca 2185458  T
Q  201 tttgagagttagagagtggattctctcttggcttctgagcca 242  Q
    ||||| ||||||||| ||||||||||||||  ||||||||||    
T  2185459 tttgaaagttagagaatggattctctcttgatttctgagcca 2185500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 23619338 - 23619481
Alignment:
Q  97 ccattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagtt 194  Q
    ||||||||||||||||||  ||  ||| ||||||||| |||||||||||   | |||||||||||||  |||  | | |||| |||| |||||| ||| |    
T  23619338 ccattactatttcaactaaaatctggcatctaggattgctataaataagatcacttccttcatgtatcatcatcaatggaaacatat-aaaactcgag-t 23619435  T
Q  195 ttctcatttgagagttagagagtggattctctcttggcttctgagc 240  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||    
T  23619436 ttctcatttgagagtaatagagtggattctctcttggtttctgagc 23619481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 26137182 - 26137128
Alignment:
Q  20 attccaccaccctactattgacaataaggccaacaagcca-catgtttgacattt 73  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  26137182 attccaccaccctactattgacaataaggccaacaagtcaccatatttgacattt 26137128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 596 - 671
Target Start/End: Complemental strand, 5382927 - 5382852
Alignment:
Q  596 ctgccacgtgtcactctgtgccacatcctcacccagtcacccaaaattaccagaaattacatatttgccccaaaac 671  Q
    ||||||||||||||   ||||||| || ||||||||||| ||||||||  ||||||||||| |||| |||||||||    
T  5382927 ctgccacgtgtcacctagtgccacgtcatcacccagtcatccaaaattttcagaaattacaaattttccccaaaac 5382852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 624 - 671
Target Start/End: Complemental strand, 13722671 - 13722624
Alignment:
Q  624 tcacccagtcacccaaaattaccagaaattacatatttgccccaaaac 671  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  13722671 tcacccagtcacccaaaattttcagaaattacaaatttgccccaaaac 13722624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 23619238 - 23619324
Alignment:
Q  20 attccaccaccctactattgacaataaggccaacaagcca-catgtttgacatt----ttctatttttactagattgtatttccatt 101  Q
    ||||||||| ||||||||||||  |||||| ||||||||| |||||||||||||    || | ||||||||||||||| ||||||||    
T  23619238 attccaccatcctactattgactttaaggcaaacaagccatcatgtttgacattatatttttttttttactagattgtgtttccatt 23619324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 42375175 - 42375785
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  42375175 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 42375274  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  | ||||||||||| ||||||||||||| | ||| ||||||||||  ||||| || ||| ||| |||| |||||||||    
T  42375275 caacactatttcagctaccatatgacctctaggattgctataaataaggccacttctttcatgtattaccacaatttaaaatatacaaaa-cttgagttt 42375373  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42375374 -ctcatttgagagttagagagtggattctctcttggtttctgagtcatattggcatcagagtaaggttccaaatccggagttgagtttgagtgaaagaat 42375472  T
Q  296 caacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgc 395  Q
    ||||||||||||||||||||||||||||||||||   |   ||||||||||||| ||||||||||||||||||||||       ||||||||||||||||    
T  42375473 caacggaaagtttgagttttctaagggtgttcttgaagaaaaagagctgccaccttcgaaactctactttgcggccattttttcgcaaaactaacgccgc 42375572  T
Q  396 cattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggacc 495  Q
    ||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||| ||||||||    
T  42375573 cattgcgttcggaaggccaaaaaacattggattggaggtttttgtcaccaacggagcctctacgagccgccaaacgactcgccagagttcttgccggacc 42375672  T
Q  496 atcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaaccagtagctag 595  Q
    | ||||||||||| | ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| || ||      
T  42375673 accacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccggtcagcagccacatcatctgccacgtgtcacttccaaccaataactca 42375772  T
Q  596 ctgccacgtgtca 608  Q
    | |||||||||||    
T  42375773 ccgccacgtgtca 42375785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 119 - 608
Target Start/End: Original strand, 23200323 - 23200807
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtg 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  23200323 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagtg 23200420  T
Q  219 gattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttcta 318  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23200421 gattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaatggaaagtttgagttttcta 23200520  T
Q  319 agggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgccattgtgttcggaaggccgaaaa 418  Q
    |||||||||||   |   ||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||  ||||||||||||||||    
T  23200521 agggtgttcttgaagaaaaagagctgccaccatcgaaactctactttgcggccattttatcgcaaaactaacgccgccattgcattcggaaggccgaaaa 23200620  T
Q  419 accttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccacc 518  Q
    ||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||| ||||||| |||||||||||     |||||    
T  23200621 accttggacaggaggtttttgtcaccaacgaagcctccacgagccgccaaacgactcaccggagttctcgtcggaccaccacccgccgcctt---ccacc 23200717  T
Q  519 accggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaaccagtagctagctgccacgtgtca 608  Q
     || ||||||||||||||||||| || ||||||||||||||| || |||||||||||| ||||||| || || ||  | |||||||||||    
T  23200718 gccagaagtctagaggttgaagatgaccagtcagcagccacaccagctgccacgtgtcacttccaatcaataacttaccgccacgtgtca 23200807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 119 - 608
Target Start/End: Complemental strand, 14477028 - 14476554
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtg 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  14477028 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagtg 14476931  T
Q  219 gattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttcta 318  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14476930 gattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttcta 14476831  T
Q  319 agggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgccattgtgttcggaaggccgaaaa 418  Q
    |||||||||||   |   ||||||||||||| ||||||||||||||||||||||       |||||| |||||||||||||| |||||||||||||||||    
T  14476830 agggtgttcttgaagaaaaagagctgccaccatcgaaactctactttgcggcca-tttttcgcaaaattaacgccgccattgcgttcggaaggccgaaaa 14476732  T
Q  419 accttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccacc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||| ||||||||||| | ||||| |    
T  14476731 accttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg------------actcgccggaccaccacccgccgccactaaccatc 14476644  T
Q  519 accggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaaccagtagctagctgccacgtgtca 608  Q
     ||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| || ||  | |||||||||||    
T  14476643 gccggatggctagaggttgaagacgaccagtcagcagccacatcagctgccacgtgtcacttccaaccaataacttaccgccacgtgtca 14476554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 2797249 - 2796738
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  2797249 gctagctttccaattccaccaccctactattgacaataaggccaataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 2797150  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||  | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  2797149 cagcactatttcagctaccatatggcctctaggattgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 2797051  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||    
T  2797050 -ctcatttgagagttagagagtggattctctcttggtttctgagccatattgtcattatagcaaggttccaaatccggagttgagtttgagtgaaagaat 2796952  T
Q  296 caacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgc 395  Q
    ||||||||||||||||||||||||||||||||||   |   ||||||| ||||| ||||||||||||||||| ||||       | |||| |||||||||    
T  2796951 caacggaaagtttgagttttctaagggtgttcttgaagaaaaagagctaccaccttcgaaactctactttgcagccattttttcgtaaaaataacgccgc 2796852  T
Q  396 cattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggacc 495  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  2796851 cattgcgttcggaaggccgaaaaaccctgggctggaggtttttgtcaccaacggagcctccacgagccgccaaacgactcgtcggagttctcgccggacc 2796752  T
Q  496 atcacccgccgccg 509  Q
    | |||||| |||||    
T  2796751 accacccgtcgccg 2796738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 626 - 816
Target Start/End: Original strand, 23200893 - 23201085
Alignment:
Q  626 acccagtcacccaaaattaccagaaattacatatttgccccaaaacattttcgaaatttcagatttgccccaaaactttctgaaattagaaaattgcccc 725  Q
    ||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23200893 acccagtcacccaaaattttcagaaattacaaatttgccccacaacattttcgaaatttcagatttgccccaaaactttctgaaattagaaaattgcccc 23200992  T
Q  726 tcaacttt-aaaaattgcagaattacccctgaactttttg-aattgcaaatctgcccctattctttctggaattacaattttacccttgttca 816  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23200993 tcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatttgcccctattctttctggaattacaattttacccttgttca 23201085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 21010650 - 21010320
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttccatt----- 101  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||         
T  21010650 gctagctttccaatttcaccaccctactattgacaataaggccaacaagccaccatgtttgacaatatctatttttactagattgtgtttccattgatgt 21010551  T
Q  102 -------------actatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaa 186  Q
                 |||||||||||||| ||  ||||||||||||| ||||||||||| | | |||||||||||||   ||  | |||||| |||||||||    
T  21010550 gttaattattattactatttcaactacaatctggcctctaggattgctataaataagaccacttccttcatgtatcaacatcaattgaaatatataaaaa 21010451  T
Q  187 cttgagttttctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgag 286  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  21010450 cttgagttt-ctcatttcagagttagagagtggatactctcttggtttctgagccattttggcaccagagcaaggttccaaatccggagttgagtttgag 21010352  T
Q  287 tgaaagaatcaacggaaagtttgagttttcta 318  Q
    ||||||||||| || ||||||| |||||||||    
T  21010351 tgaaagaatcagcgaaaagtttaagttttcta 21010320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 596 - 816
Target Start/End: Complemental strand, 14476498 - 14476276
Alignment:
Q  596 ctgccacgtgtcactctgtgccacatcctcacccagtcacccaaaattaccagaaattacatatttgccccaaaacattttcgaaatttcagatttgccc 695  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||  |||||||| || |||||||||||||| ||| |||||||||||||||| ||    
T  14476498 ctgccacgtgtcactcagtgccacgtcatcacccagtcacccaacattttcagaaattgcaaatttgccccaaaacttttccgaaatttcagatttg-cc 14476400  T
Q  696 caaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcag-aattacccctgaactttttg-aattgcaaatctgcccctattctttctg 792  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| | || |||||||| |||||||| |||||||||| | |||||||||||||||    
T  14476399 caaaactttctgaaattagaaaattgcccctaaactttcaaaaattgcggaaaatacccctgtactttttgaaattgcaaattttcccctattctttctg 14476300  T
Q  793 gaattacaattttacccttgttca 816  Q
    ||||||||||||||||||||||||    
T  14476299 gaattacaattttacccttgttca 14476276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 679 - 816
Target Start/End: Original strand, 42375894 - 42376033
Alignment:
Q  679 aaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttg-aattgcaaatct 776  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||||| |    
T  42375894 aaattacaaatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgcaaattt 42375993  T
Q  777 gcccctattctttctggaattacaattttacccttgttca 816  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42375994 gcccctattctttctggaattacaattttacccttgttca 42376033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 14471664 - 14471543
Alignment:
Q  120 gcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtgg 219  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  14471664 gcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagtgg 14471567  T
Q  220 attctctcttggcttctgagccat 243  Q
    |||||||||||| |||||||||||    
T  14471566 attctctcttggtttctgagccat 14471543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 2790819 - 2790575
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  2790819 gctagctttccaatttcaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 2790720  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||| || |||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  2790719 cagcactatttcagctaccatatggcctttaagattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 2790621  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2790620 -ctcatttgagagttagagagtggattctctcttggtttctgagcca 2790575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 23202692 - 23202813
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtg 218  Q
    ||||||||||||||||||||||||||  |||||||||||||||  |||||| |||||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  23202692 ggcctctaggattactataaataaggacatttccttcatgtatcatcacaatttgaaatatattaaa-cttgagttt-ctcatttgagagttagagagtg 23202789  T
Q  219 gattctctcttggcttctgagcca 242  Q
    ||||||||||||| ||||||||||    
T  23202790 gattctctcttggtttctgagcca 23202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 39170115 - 39170236
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtg 218  Q
    ||||||||||||||||| || |||||| |||||||||||| ||  |||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  39170115 ggcctctaggattactaaaactaaggccatttccttcatgcatcatcacaatttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagtg 39170212  T
Q  219 gattctctcttggcttctgagcca 242  Q
    ||||||||||||| ||||||||||    
T  39170213 gattctctcttggtttctgagcca 39170236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 329
Target Start/End: Original strand, 34427175 - 34427308
Alignment:
Q  195 ttctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaa 294  Q
    ||||| |||||||||||||||||||||||||| ||| ||| ||||| ||  | |||| |||||  ||||| |||| ||||||||||||||| ||| ||||    
T  34427175 ttctcgtttgagagttagagagtggattctcttttgacttatgagcaattctagcattagagc-cggttcaaaattcggagttgagtttgaatgagagaa 34427273  T
Q  295 tcaacggaaagtttgagttttctaagggtgttctt 329  Q
    | ||| |||| ||| |||||| ||||| |||||||    
T  34427274 ttaacagaaaatttaagttttttaaggatgttctt 34427308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 24567584 - 24567504
Alignment:
Q  20 attccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttcca 99  Q
    ||||||||||||||||||||||  |||| | |||||||||| |||||||||| | ||||||||||||||||||| ||||||    
T  24567584 attccaccaccctactattgactttaagccaaacaagccaccatgtttgacaatatctatttttactagattgtgtttcca 24567504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 24567707 - 24567624
Alignment:
Q  466 caaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagt 549  Q
    |||||||||| || ||||||||| | ||||| ||||| ||  | || |||||||||||||||| ||||||||||||||| ||||    
T  24567707 caaacgcctctccagagttctcgtcagaccaccacccaccaacacacaccaccaccggaagtcaagaggttgaagacgaccagt 24567624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 395004 - 394922
Alignment:
Q  20 attccaccaccctactattgacaataaggccaacaagcca-catgtttgacattttctatttttactagattgtatttccatt 101  Q
    |||||| ||| |||||||||||  |||| | || |||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  395004 attccatcactctactattgactttaagccaaataagccatcatgtttgacaatatctatttttactagattgtgtttccatt 394922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 671
Target Start/End: Original strand, 42375841 - 42375916
Alignment:
Q  596 ctgccacgtgtcactctgtgccacatcctcacccagtcacccaaaattaccagaaattacatatttgccccaaaac 671  Q
    ||||||||||||||   ||||||| || |||||| || ||||||||||  || |||||||| ||||||||||||||    
T  42375841 ctgccacgtgtcacctagtgccacgtcatcacccggttacccaaaattttcaaaaattacaaatttgccccaaaac 42375916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 42377395 - 42377430
Alignment:
Q  207 agttagagagtggattctctcttggcttctgagcca 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  42377395 agttagagagtggattctctcttggtttctgagcca 42377430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 14632796 - 14632666
Alignment:
Q  99 attactatttcaactacca--tggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagtttt 196  Q
    ||||||||||||||||| |  || |||||| |||| |||||||| |||  | ||||||| |||||  |||  | |||||| || | |||| ||||| |||    
T  14632796 attactatttcaactacaatctgacctctaagattgctataaatgaggtcacttccttcgtgtatcatcatgaattgaaatat-ttaaaatttgag-ttt 14632699  T
Q  197 ctcatttgagagttagagagtggattctctctt 229  Q
    ||||||||| ||||| |||||||||||||||||    
T  14632698 ctcatttgaaagttaaagagtggattctctctt 14632666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 608
Target Start/End: Complemental strand, 29771 - 29173
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  29771 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 29672  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  29671 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 29573  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29572 -ctcatttgagagttagagagtggattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 29474  T
Q  296 caacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgc 395  Q
    ||||||||||||||||||||||||||||||||||   |   ||||||||||||| ||||||||||||||||||||||       ||||||||||||||||    
T  29473 caacggaaagtttgagttttctaagggtgttcttgaagaaaaagagctgccaccttcgaaactctactttgcggccattttttcgcaaaactaacgccgc 29374  T
Q  396 cattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggacc 495  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||    
T  29373 cattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg------------actcgccggacc 29286  T
Q  496 atcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaaccagtagctag 595  Q
    | ||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||| |||||| || ||      
T  29285 accacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccagtcagcagccacatcaccagccacgtgtcactttcaaccaataactta 29186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 678 - 816
Target Start/End: Complemental strand, 29073 - 28933
Alignment:
Q  678 gaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttgaa-ttgcaaatc 775  Q
    |||||| || |||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||     
T  29073 gaaattacaaatttaccccaaacctttttgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatt 28974  T
Q  776 tgcccctattctttctggaattacaattttacccttgttca 816  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  28973 tgcccctattctttctgaaattacaattttacccttgttca 28933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 24455 - 24211
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  24455 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 24356  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  24355 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 24257  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24256 -ctcatttgagagttagagagtggattctctcttggtttctgagcca 24211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 86318 - 86916
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  86318 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 86417  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  86418 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 86516  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86517 -ctcatttgagagttagagagtggattctctcttggtttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 86615  T
Q  296 caacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgc 395  Q
    ||||||||||||||||||||||||||||||||||   |   ||||||||||||| ||||||||||||||||||||||       ||||||||||||||||    
T  86616 caacggaaagtttgagttttctaagggtgttcttgaagaaaaagagctgccaccttcgaaactctactttgcggccattttttcgcaaaactaacgccgc 86715  T
Q  396 cattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggacc 495  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||    
T  86716 cattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg------------actcgccggacc 86803  T
Q  496 atcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaaccagtagctag 595  Q
    | ||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||| |||||| || ||      
T  86804 accacccgccgccactaaccaccgccggaagtctagaggttgaagacgaccagtcagcagccacatcaccagccacgtgtcactttcaaccaataactta 86903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 19802789 - 19803120
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  19802789 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 19802888  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||   |||| |||||| |||||||| |||||||||    
T  19802889 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattacaacaatttgaaatatataaaa-cttgagttt 19802987  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  19802988 -ctaatttgagagttagagagtggattctctcttggtttctgagccatattggcatcagagcaaggttccaagtccggagttgagtttgattgaaagaat 19803086  T
Q  296 caacggaaagtttgagttttctaagggtgttctt 329  Q
    ||||||||||||||||||||||||||||||||||    
T  19803087 caacggaaagtttgagttttctaagggtgttctt 19803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 678 - 816
Target Start/End: Original strand, 87016 - 87156
Alignment:
Q  678 gaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttgaa-ttgcaaatc 775  Q
    |||||| || |||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||     
T  87016 gaaattacaaatttaccccaaacctttttgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatt 87115  T
Q  776 tgcccctattctttctggaattacaattttacccttgttca 816  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  87116 tgcccctattctttctgaaattacaattttacccttgttca 87156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 91635 - 91881
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  91635 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 91734  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | || |||||||||||  ||||| |||||| |||||||| |||||||||    
T  91735 cagcactatttcagctaccatatggcctctaggattgctataaataaggccactttcttcatgtattaccacaatttgaaatatataaaa-cttgagttt 91833  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccata 244  Q
     ||||||||||||||||||||||||||||||||||| || |||||||||    
T  91834 -ctcatttgagagttagagagtggattctctcttggtttatgagccata 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 29011026 - 29010782
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  29011026 gctagctttccaattccaccaccctactatcgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 29010927  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||  | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  29010926 cagcactatttcagctaccatatggcctctaggattgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 29010828  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
     ||||||||||||||||||||||||||||||||||  ||||||||||    
T  29010827 -ctcatttgagagttagagagtggattctctcttgatttctgagcca 29010782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 26491980 - 26491902
Alignment:
Q  20 attccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttc 97  Q
    |||| ||||||||||| ||||   |||||| |||||| ||| |||||||||| | ||||||||||||||||||| ||||    
T  26491980 attctaccaccctactgttgattttaaggcaaacaagtcaccatgtttgacaatgtctatttttactagattgtgtttc 26491902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 121 - 559
Target Start/End: Original strand, 32703808 - 32704244
Alignment:
Q  121 cctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtgga 220  Q
    ||||||||||| ||||||||||||| | ||||||||||||||  ||||| ||||||  ||||||| ||||||||| ||||||||||||||| ||||||||    
T  32703808 cctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatgtataaaa-cttgagttt-ctcatttgagagttatagagtgga 32703905  T
Q  221 ttctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttctaag 320  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32703906 ttctctcttggtttctgagccatattggcatcagagcacggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgagttttctaag 32704005  T
Q  321 ggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgccattgtgttcggaaggccgaaaaac 420  Q
    |||||||||   |   ||||||||||||| ||||||||||||||||||||||       ||||||||||||| ||||||| |||||||||||||||||||    
T  32704006 ggtgttcttgaagaaaaagagctgccaccttcgaaactctactttgcggccattttttcgcaaaactaacgctgccattgcgttcggaaggccgaaaaac 32704105  T
Q  421 cttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccaccac 520  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||| ||||||||||| | ||||||| |    
T  32704106 cttggaccggtggtttttgtcaccaacggagcctccacgagccgccaaacgacttgccggagctctcgccggaccaccacccgccgccactaaccaccgc 32704205  T
Q  521 cggaagtctagaggttgaagacgatcagtcagcagccac 559  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  32704206 cggaagtctagaggttgaagacgaccagtcagcagccac 32704244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 587
Target Start/End: Complemental strand, 16778046 - 16777469
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||     | ||| | | |||   |  |||      
T  16778046 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatatttgacatttactagattgtgtttccattgatgtattaattat 16777947  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  16777946 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 16777848  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaat 295  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16777847 -ctcatttgagagttagagagtggattctctcttggtttctgagccatattggcatcatagcaaggttccaaatccggagttgagtttgagtgaaagaat 16777749  T
Q  296 caacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgc 395  Q
    ||||||||||||||||||||||||||||||||||   |   ||||||||||||| |||||||| |||||||||||||       |||||||||| |||||    
T  16777748 caacggaaagtttgagttttctaagggtgttcttgaagaaaaagagctgccaccttcgaaactatactttgcggccatttttttgcaaaactaaagccgc 16777649  T
Q  396 cattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggacc 495  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||    
T  16777648 cattgcgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaacggagcctccacgagccgccaaacg------------actcgccggacc 16777561  T
Q  496 atcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaacca 587  Q
    | |||||||| || | ||||||||||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||||| ||||||||||    
T  16777560 accacccgccaccactaaccaccaccggaagtctagaggatgaagacaaccagtcaacagccacatcagctgccacgtgtcacttccaacca 16777469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 596 - 815
Target Start/End: Complemental strand, 16777392 - 16777172
Alignment:
Q  596 ctgccacgtgtcactctgtgccacatcctcacccagtcacccaaaattaccagaaattacatatttgccccaaaacattttcgaaatttcagatttgccc 695  Q
    |||||||||||||||| |||||||||| ||||||||||||| ||||||  ||||||| ||| || ||||||| ||| |||||||||||||||||||||||    
T  16777392 ctgccacgtgtcactcagtgccacatcatcacccagtcacctaaaattttcagaaataacaaatctgccccataactttttcgaaatttcagatttgccc 16777293  T
Q  696 caaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttg-aattgcaaatctgcccctattctttctgg 793  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||| |||||| ||||  |||||||| |||||||||| | ||||||||||||||||    
T  16777292 caaaacattatgaaattagaaaattgcccctcaactttcaaaaattgcggaatta-ccctatactttttgaaattgcaaattttcccctattctttctgg 16777194  T
Q  794 aattacaattttacccttgttc 815  Q
    | |||||||||| |||||||||    
T  16777193 atttacaatttttcccttgttc 16777172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 32708060 - 32708304
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  32708060 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatatattaattat 32708159  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||| |||||||||| ||    
T  32708160 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat-aaaacttgag-tt 32708257  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  32708258 tctcatttgagagttagagagtggattctctcttagtttctgagcca 32708304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 16772710 - 16772466
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  16772710 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 16772611  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||  ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  16772610 cagcactatttcagctaccatatggcctctaggatagctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 16772512  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
     |||||||||||||||||||||||||||||| |||| ||||||||||    
T  16772511 -ctcatttgagagttagagagtggattctctattggtttctgagcca 16772466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 32703692 - 32703727
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaa 43  Q
    |||||||||| |||||||||||||||||||||||||    
T  32703692 gctagctttccaattccaccaccctactattgacaa 32703727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 13160389 - 13161005
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||     | ||| | | |||   |  |||      
T  13160389 gctagctttccaattccaccaccctactattgaaaataaggccaacaagcctccatgtttgacatttactagattgtgtttccattgatgtattaattat 13160488  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcac-aacttgaaagatataaaaacttgagtt 194  Q
     | |||||||||| |||||||  ||||||||||||| ||||||||||||| | |||||||||||||| |||| || |||||| |||||||||||||||||    
T  13160489 tagtactatttcagctaccatatggcctctaggattgctataaataaggctacttccttcatgtattatcaccaatttgaaatatataaaaacttgagtt 13160588  T
Q  195 ttctcatttgagagttagagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaa 294  Q
    | ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||    
T  13160589 t-ctcatatgagagttagagagtggattctctcttcgtttctgagccatattggcatcaaagcaaggttccaaattcggagttgagtttgagtggaaaaa 13160687  T
Q  295 tcaacggaaagtttgagttttctaagggtgttcttagtgtttaagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccg 394  Q
    |||| ||||||||| |||||||||| ||||||||||  |   ||||| || |||| |||||||||||| |||||||||       || |||||||||||     
T  13160688 tcaatggaaagtttcagttttctaaaggtgttcttaaagaaaaagagttgtcaccttcgaaactctacattgcggccatttttacgccaaactaacgcca 13160787  T
Q  395 ccattgtgttcggaaggccgaaaaaccttggactggaggtttttgtcaccaac---ggagcctccacgagtcgccaaacgcctcgccggagttctcgccg 491  Q
    |||||| |||  |||||||||||||||||||  ||||||||||||||||||||   |||||||||||||| ||||||||| |||||| ||||||| ||||    
T  13160788 ccattgcgtttagaaggccgaaaaaccttggcttggaggtttttgtcaccaacggaggagcctccacgagccgccaaacgactcgccagagttctggccg 13160887  T
Q  492 gaccatc-acccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacgtgtcgcttccaaccagta 590  Q
    ||||| | ||  || ||| ||||||||| | ||| || ||||||||||||||||  ||||| ||||||||||| ||||||  |||| |||||||||| |     
T  13160888 gaccaccaacatgctgccacaaaccaccgctggatgtttagaggttgaagacgacaagtcaacagccacatcagctgccagatgtcacttccaaccaatg 13160987  T
Q  591 gctagctgccacgtgtca 608  Q
     || | ||||||||||||    
T  13160988 acttgttgccacgtgtca 13161005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 596 - 816
Target Start/End: Original strand, 11711790 - 11712010
Alignment:
Q  596 ctgccacgtgtcactctgtgccacatcctcacccagtcacccaaaattaccagaaattacatatttgccccaaaacattttcgaaatttcagatttgccc 695  Q
    |||||||||||||| | ||||||| || | |||||||||||||||||| ||||||||| || |||| ||||||||| |||  ||||||||| ||||||||    
T  11711790 ctgccacgtgtcacccagtgccacgtcatgacccagtcacccaaaatttccagaaattgcaaattttccccaaaacttttcagaaatttcatatttgccc 11711889  T
Q  696 caaaactttctgaaattagaaaattgcccctcaacttt--aaaaattgcagaattacccctgaactttttgaattgcaaatctgcccctattctttctgg 793  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |    ||||| |||||||||| ||||| |||||||| |||    
T  11711890 caaaactttctgaaattagaaaattgcccctcaactttcaaaaaattgcagaattaccctt--tttttttaaattgcaaatttgcccatattctttatgg 11711987  T
Q  794 aattacaattttacccttgttca 816  Q
    |||||||||||||||||||||||    
T  11711988 aattacaattttacccttgttca 11712010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 337 - 559
Target Start/End: Original strand, 11711490 - 11711700
Alignment:
Q  337 aagagctgccaccctcgaaactctactttgcggccannnnnnngcaaaactaacgccgccattgtgttcggaaggccgaaaaaccttggactggaggttt 436  Q
    ||||||||||||| ||||||||||||||||||| ||       ||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||    
T  11711490 aagagctgccaccttcgaaactctactttgcggtcattttttcgcaaaactaactccgccattgctttctgaaggccgaaaaaccttggactggaggttt 11711589  T
Q  437 ttgtcaccaacggagcctccacgagtcgccaaacgcctcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggtt 536  Q
    ||||||||||||||||||||||||| ||||||| |             |||||||||||| ||||||||||| | ||||||| |||||||||||||||||    
T  11711590 ttgtcaccaacggagcctccacgagccgccaaatg------------actcgccggaccaccacccgccgccactaaccaccgccggaagtctagaggtt 11711677  T
Q  537 gaagacgatcagtcagcagccac 559  Q
    |||||||| ||||||||| ||||    
T  11711678 gaagacgaccagtcagcaaccac 11711700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 13166948 - 13167091
Alignment:
Q  101 tactatttcaactacc--atggcctctaggattactataaataaggcaatttccttcatgtattctcac-aacttgaaagatataaaaacttgagttttc 197  Q
    |||||||||| |||||  ||||||||||||||| ||||||||||||  | |||||||||||||| |||| || |||||| |||||||||||||||||| |    
T  13166948 tactatttcagctaccttatggcctctaggattgctataaataaggtcacttccttcatgtattatcaccaatttgaaatatataaaaacttgagttt-c 13167046  T
Q  198 tcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||    
T  13167047 tcatttgagagttagagagtgaattctctcttgatttctgagcca 13167091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 11716542 - 11716687
Alignment:
Q  102 actatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctc 199  Q
    ||||||||| |||||||  ||||||||||||| |||||||||| || | |||||||||||||   || || |||||| |||||||| ||||||||| |||    
T  11716542 actatttcagctaccatatggcctctaggattgctataaataatgccacttccttcatgtatcaccataatttgaaatatataaaa-cttgagttt-ctc 11716639  T
Q  200 atttgagagttagagagtggattctctcttggcttctgagccatattg 247  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  11716640 atttgagagttagagagtggattctctcttggtttctgagccatattg 11716687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 11711346 - 11711459
Alignment:
Q  149 ttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtggattctctcttggcttctgagccatattgg 248  Q
    |||||||||||||   ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  11711346 ttccttcatgtatcaccacaatttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagtggattctctcttggtttctgagccgtattgg 11711443  T
Q  249 catcagagcaaggttc 264  Q
    ||| ||||||||||||    
T  11711444 cattagagcaaggttc 11711459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 34379141 - 34379250
Alignment:
Q  212 gagagtggattctctcttggcttctgagccatattggcatcagagcaaggttccaaatccggagttgagtttgagtgaaagaatcaacggaaagtttgag 311  Q
    ||||||||||| |||||| ||||||||||||| ||||||| | |||||||||||||||||  |||| |||||||||||  |||||||| |||||||||||    
T  34379141 gagagtggattgtctcttcgcttctgagccattttggcataaaagcaaggttccaaatccaaagttcagtttgagtgagtgaatcaactgaaagtttgag 34379240  T
Q  312 ttttctaagg 321  Q
    ||||||||||    
T  34379241 ttttctaagg 34379250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 11708922 - 11708988
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagcca-catgtttgacattt 73  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11708922 gctagctttccaattccacaaccctattattgacaataaggccaacaagccaccatgtttgacattt 11708988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 649 - 800
Target Start/End: Original strand, 13161114 - 13161265
Alignment:
Q  649 aaattacatatttgccccaaaacattttcgaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaacttt-aaaaattgcagaat 747  Q
    |||||||| || ||||||||||| ||||||||||| || |||||||| |||||||| |||||||| ||| |||||||||| |||| |||| ||||||| |    
T  13161114 aaattacaaatctgccccaaaac-ttttcgaaattacatatttgccc-aaaactttttgaaattacaaagttgcccctcagctttcaaaatttgcagatt 13161211  T
Q  748 tacccctgaactttttg-aattgcaaatctgcccctattctttctggaattaca 800  Q
    |||||||  | |||||| |||||||||| | ||| | ||||||||  |||||||    
T  13161212 tacccctatattttttgaaattgcaaattttcccatgttctttctaaaattaca 13161265  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 11716438 - 11716504
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagcca-catgtttgacattt 73  Q
    |||||||||  |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11716438 gctagcttttcaattccacaaccctattattgacaataaggccaacaagccaccatgtttgacattt 11716504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 13166856 - 13166902
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaaca 54  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  13166856 gctacctttccaattccaccaccctactattgacaataaggccaaca 13166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 34379055 - 34379101
Alignment:
Q  115 ccatggcctctaggattactataaataaggcaatttccttcatgtat 161  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||||    
T  34379055 ccatggcttctaggattactataaataaggtcatttccttcatgtat 34379101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 8e-85; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 24092314 - 24092098
Alignment:
Q  24 caccaccctactattgacaataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttccattactatttcaactaccat--gg 120  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||    
T  24092314 caccaccctactattgacaataaggccaacaagccaccatgtttgacattttctatttttactagattgtgtttccattactatttcaactaccatatgg 24092215  T
Q  121 cctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtgga 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  24092214 cctctaggattactataaataaggccatttccttcatgtattctcacaatttgaaatatat-aaaacttgag-tttctcatttgagagttagagagtgga 24092117  T
Q  221 ttctctcttggcttctgag 239  Q
    ||||||||| | |||||||    
T  24092116 ttctctcttagtttctgag 24092098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 12842782 - 12843026
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagccac-atgtttgacattttcta-----tttttac-tagat---tgtatttc 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     | ||| | | |||   |  |||      
T  12842782 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattat 12842881  T
Q  98 cattactatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttt 195  Q
    ||  ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| |||||||||    
T  12842882 cagcactatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt 12842980  T
Q  196 tctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||    
T  12842981 -ctcatttgagagttagagagtggattctctcttggtttctgagcca 12843026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 37022786 - 37022666
Alignment:
Q  120 gcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagtgg 219  Q
    |||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  37022786 gcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt-ctcatttgagagttagagagtgg 37022689  T
Q  220 attctctcttggcttctgagcca 242  Q
    |||||||||||| |||| |||||    
T  37022688 attctctcttggtttcttagcca 37022666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 37023171 - 37023105
Alignment:
Q  8 gctagctttctaattccaccaccctactattgacaataaggccaacaagcca-catgtttgacattt 73  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  37023171 gctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatatttgacattt 37023105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 656863 - 656803
Alignment:
Q  182 aaaaacttgagttttctcatttgagagttagagagtggattctctcttggcttctgagccat 243  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  656863 aaaaacttgagttt-ctcatttgagagttagagagtggattctctcttggtttctgagccat 656803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 6746812 - 6746689
Alignment:
Q  119 ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatat-aaaaacttgagttttctcatttgagagttagagagt 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||| ||||||||| | ||||||||||||||||||||||||    
T  6746812 ggcctctaggattactataaataaggccatttccttcatgtataatcacaatttgaaatatataaaaaacttgcg-tttctcatttgagagttagagagt 6746714  T
Q  218 ggattctctcttggcttctgagcca 242  Q
    |||||||||||||| ||||||||||    
T  6746713 ggattctctcttggtttctgagcca 6746689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 473 - 608
Target Start/End: Original strand, 14023913 - 14024048
Alignment:
Q  473 ctcgccggagttctcgccggaccatcacccgccgccgcaaaccaccaccggaagtctagaggttgaagacgatcagtcagcagccacatcatctgccacg 572  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||| || ||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  14023913 ctcgccggagttctcgccggaccaccacccgccgccactaaccaccgccagaagtttagaggttgaagacgaccagccagcagccacatcagctgccacg 14024012  T
Q  573 tgtcgcttccaaccagtagctagctgccacgtgtca 608  Q
    |||| |||||||||| || || |||| |||||||||    
T  14024013 tgtcacttccaaccaataacttgctgacacgtgtca 14024048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 14026968 - 14027108
Alignment:
Q  102 actatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctc 199  Q
    ||||||||| |||||||  ||||||| ||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||| ||||||||| |||    
T  14026968 actatttcagctaccatacggcctctgggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaa-cttgagttt-ctc 14027065  T
Q  200 atttgagagttagagagtggattctctcttggcttctgagcca 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  14027066 atttgagagttagagagtggattctctcttggtttctgagcca 14027108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 726
Target Start/End: Original strand, 14024112 - 14024207
Alignment:
Q  631 gtcacccaaaattaccagaaattacatatttgccccaaaacattttcgaaatttcagatttgccccaaaactttctgaaattagaaaattgcccct 726  Q
    ||||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||| ||||  |||||||  |||||  | ||||||||||    
T  14024112 gtcacccaaaatttccagaaattacaaatttgccccaatactttttcgaaatttcagattttcccctcaactttcaaaaattgcagaattgcccct 14024207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 8724699 - 8724822
Alignment:
Q  118 tggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctcatttgagagttagagagt 217  Q
    ||||||||||||||| |||||||| ||| | | | |||||||||||| |  | |||||   |||||||| ||| |  ||||||||||||||||||| |||    
T  8724699 tggcctctaggattagtataaatagggccaatgctttcatgtattctgatga-ttgaagtttataaaaaattgtgagttctcatttgagagttagatagt 8724797  T
Q  218 ggattctctcttggcttctgagcca 242  Q
    ||||||||||||||||| |||||||    
T  8724798 ggattctctcttggcttttgagcca 8724822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 14026862 - 14026930
Alignment:
Q  8 gctagctttctaattccaccaccc--tactattgacaataaggccaacaagcca-catgtttgacattt 73  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  14026862 gctaactttccaattccaccaccccctactattgacaataaggccaacaagccaccatgtttgacattt 14026930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 37537944 - 37537890
Alignment:
Q  188 ttgagttttctcatttgagagttagagagtggattctctcttggcttctgagcca 242  Q
    |||||| |||||| ||||||||| |||||| |||||||| |||||||||||||||    
T  37537944 ttgagtgttctcaattgagagttcgagagttgattctcttttggcttctgagcca 37537890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 774
Target Start/End: Original strand, 14024129 - 14024228
Alignment:
Q  678 gaaatttcagatttgccccaaaactttct-gaaattagaaaattgcccctcaacttt-aaaaattgcagaattacccctgaactttttg-aattgcaaat 774  Q
    |||||| || ||||||||||| ||||| | ||||||  | | || |||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||    
T  14024129 gaaattacaaatttgccccaatactttttcgaaatttcagattttcccctcaactttcaaaaattgcagaattgcccctgtactttttgaaattgcaaat 14024228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 36314834 - 36314722
Alignment:
Q  8 gctagctttctaattccaccaccctactattga-caataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttccattacta 105  Q
    ||||||||||  |||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  36314834 gctagctttcctattccaccaccctaatattgaacaataaggccaacaaaccaccatgtttgacattttctattattactagattgtgtttccattacta 36314735  T
Q  106 tttcaactaccat 118  Q
    |||||||||||||    
T  36314734 tttcaactaccat 36314722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 20925531 - 20925392
Alignment:
Q  102 actatttcaactaccat--ggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagttttctc 199  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||| | ||| ||||||||||  ||||| |||||| |||||||| ||||||||| |||    
T  20925531 actatttcagctaccatatggcctctaggattgctataaataaggccacttc-ttcatgtattaccacaatttgaaatatataaaa-cttgagttt-ctc 20925435  T
Q  200 atttgagagttagagagtggattctctcttggcttctgagcca 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  20925434 atttgagagttagagagtggattctctcttggtttctgagcca 20925392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 20925617 - 20925565
Alignment:
Q  26 ccaccctactattgacaataaggccaacaagcca-catgtttgacattttcta 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  20925617 ccaccctactattgacaataaggccaacaagccaccatgtttgacatttacta 20925565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 37758873 - 37759082
Alignment:
Q  8 gctagctttctaattccacca-ccctactattgacaataaggccaacaagcca-catgtttgacattttctatttttactagattg-------tatttcc 98  Q
    ||||||||||| ||||||||| |||||||||||||  ||| |||||||||||| ||||  ||||| | ||||||||||||||||||        |||       
T  37758873 gctagctttctcattccaccacccctactattgactttaatgccaacaagccaccatg--tgacaatatctatttttactagattgatgtattaattatt 37758970  T
Q  99 attactatttcaactacca--tggcctctaggattactataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaacttgagtttt 196  Q
    ||||||||||||||||| |  ||||||||| |||| |||||||||||   | ||||||||| |||  |||  | |||||| |||| |||||||||| |||    
T  37758971 attactatttcaactacaatctggcctctaagattgctataaataagatcacttccttcatatatcatcatcaattgaaatatattaaaacttgag-ttt 37759069  T
Q  197 ctcatttgagagt 209  Q
    ||||||| |||||    
T  37759070 ctcatttaagagt 37759082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 36313883 - 36313829
Alignment:
Q  132 actataaataaggcaatttccttcatgtattctcacaacttgaaagatataaaaa 186  Q
    |||||||||||||  ||||||||| ||||| ||||||| |||||| |||||||||    
T  36313883 actataaataaggttatttccttcctgtatcctcacaatttgaaatatataaaaa 36313829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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