View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5200-Insertion-5 (Length: 332)
Name: NF5200-Insertion-5
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5200-Insertion-5 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 44615149 - 44614824
Alignment:
| Q |
7 |
agaaatcatcagtagaaatctttgtgaatattttactcgtaacaaaggcataagtgggtgaataattgtgctaataaataatatttaagtcactgatgac |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44615149 |
agaaatcatcagtagaaatctttgtgaatatattactagtaacaaaggcataagtgggtgaataattgtgctaataaagaatatttaagtcactgatgac |
44615050 |
T |
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| Q |
107 |
tcttataattctttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44615049 |
tcttataattctttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacaatcacacactaaagttttaacaaaat |
44614950 |
T |
|
| Q |
207 |
tccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614949 |
tccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaaattgaaattaaaagcctaacaaaacacaatcaaacactaaagt |
44614850 |
T |
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| Q |
307 |
tttaacaaaaactgttatttattgat |
332 |
Q |
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||||||||||||||| |||||||||| |
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| T |
44614849 |
tttaacaaaaactgtcatttattgat |
44614824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 44793420 - 44793745
Alignment:
| Q |
7 |
agaaatcatcagtagaaatctttgtgaatattttactcgtaacaaaggcataagtgggtgaataattgtgctaataaataatatttaagtcactgatgac |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44793420 |
agaaatcatcagtagaaatctttgtgaatatattactagtaacaaaggcataagtgggtgaataattgtgctaataaagaatatttaagtcactgatgac |
44793519 |
T |
|
| Q |
107 |
tcttataattctttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaat |
206 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44793520 |
tcttaaaattctttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacaatcacacactaaagttttaacaaaat |
44793619 |
T |
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| Q |
207 |
tccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagt |
306 |
Q |
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| T |
44793620 |
tccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaaattgaaattgaaagccaaacaaaacacaatcaaacactaaagt |
44793719 |
T |
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| Q |
307 |
tttaacaaaaactgttatttattgat |
332 |
Q |
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| T |
44793720 |
tttaacaaaaactgtcatttattgat |
44793745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 332
Target Start/End: Original strand, 44789760 - 44789890
Alignment:
| Q |
202 |
aaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
301 |
Q |
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|||| |||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
44789760 |
aaaaatccatttattacattaatcactcgatagcagaagattttcatacaaaaactgtcaaacttgaaattgaaagccaaacaaaacacaatcaaacact |
44789859 |
T |
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| Q |
302 |
aaagttttaacaaaaactgttatttattgat |
332 |
Q |
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| T |
44789860 |
aaagttttaacaaaaactgtcatttattgat |
44789890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 144 - 301
Target Start/End: Complemental strand, 44146980 - 44146823
Alignment:
| Q |
144 |
attattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
243 |
Q |
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|||||||| | |||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| |||| ||| |||||||||| |
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| T |
44146980 |
attattaactcgataacagaagccataacaaaacacagtcaagcactaaaattttaacaaaactccatctattacattattaactcgatggcagaagatt |
44146881 |
T |
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| Q |
244 |
tccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
301 |
Q |
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|||||||||||||| |||| ||||||||| ||||| || |||||||||||||||||| |
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| T |
44146880 |
tccatacaaaaactgtcaaccttgaaattgaaagcagaaaaaaacacaatcaaacact |
44146823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 44783372 - 44783517
Alignment:
| Q |
156 |
atagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaa |
255 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
44783372 |
atagcagaagccataacaaaacctagtcacacactaaagttttaacagaagtccatttattacattattaactcgatagcagaagatttcaatacaaaaa |
44783471 |
T |
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| Q |
256 |
ctctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
301 |
Q |
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||||||||||||| |||| || |||||||||||||||||| |
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| T |
44783472 |
tcaccaaacttgaaattgaaagtagaaaaaaacacaatcaaacact |
44783517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 44789646 - 44789743
Alignment:
| Q |
118 |
tttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttatta |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44789646 |
tttgttatgtttggaggatgtattacattattaaattga-agcagaagccataa--aagcacagtcacacactaaagttttaacaaaattccatttatta |
44789742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 29505175 - 29505255
Alignment:
| Q |
235 |
cagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaa |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
29505175 |
cagaagatttccatacaaaaactgtcaaacttgaaattgaaagcctaac-aaacacaataaaacactaaagtcttaacaaaa |
29505255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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