View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5200_high_1 (Length: 420)
Name: NF5200_high_1
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5200_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 8640914 - 8640711
Alignment:
| Q |
14 |
aggcacatgtagtagtaggaattgaccaaaaccatgacaccataaccaccaaaatcataaaattcaaactcatttctctcttggtgtcaaaattaaattt |
113 |
Q |
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| T |
8640914 |
aggcacatgtagtagtaggaattgaccaaaaccatgataccataatcaccaaaatcataaaattcaaactcatttctctcttggtgtcaaaattaaattt |
8640815 |
T |
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| Q |
114 |
tttactcaaattcatcactg-cttcataattcaagtggctaatactaattaaaatctaaacttgtcgagttggagtttgagggtctgtttatcttatata |
212 |
Q |
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| T |
8640814 |
tttactcaaattcatcactgttttgataattcaagtggctaatactaattaaaatctaaacttgttgagttggagtttgagggtctgtttatcttatata |
8640715 |
T |
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| Q |
213 |
tata |
216 |
Q |
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|||| |
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| T |
8640714 |
tata |
8640711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 8647209 - 8647059
Alignment:
| Q |
28 |
gtaggaattgaccaaaaccatgacaccataaccaccaaaatcataaaattcaaactcatttctctcttggtgtcaaaattaaattttttactcaaattca |
127 |
Q |
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| T |
8647209 |
gtaggaattgaccaaaaccatgaaaccataaccaccaaaatcatgaaattcagacccatttttcttttggtgtcaaagtcaatttttttactcaaattca |
8647110 |
T |
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| Q |
128 |
tcactg-cttcataattcaagtggctaatactaattaaaatctaaacttgt |
177 |
Q |
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| T |
8647109 |
tcactgttttggtaattcaagcggctaacactaatcaaaatctaaacttgt |
8647059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 8640686 - 8640602
Alignment:
| Q |
207 |
tatatatataagaaaatgaaactctttaaatttttactgcacaaaaaattctaacgacgtaaaattaaaataatcaaccactttt |
291 |
Q |
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| T |
8640686 |
tatatatataagaaaatgaaaatctttaaatttttactgcacaaaaaattctaacgacgtaatattaaaataatcaaccactttt |
8640602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 1391775 - 1391845
Alignment:
| Q |
25 |
gtagtaggaattgaccaaaaccatgacaccataaccaccaaaatcataaaattcaaactcatttctctctt |
95 |
Q |
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| T |
1391775 |
gtagtaggaaatgaccaaaaccatgacaccataaccaccaaaatcatgaaattcagacccatttttctctt |
1391845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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