View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5200_high_10 (Length: 321)

Name: NF5200_high_10
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5200_high_10
NF5200_high_10
[»] chr7 (41 HSPs)
chr7 (19-239)||(3734923-3735143)
chr7 (59-230)||(17152741-17152912)
chr7 (30-238)||(1586292-1586500)
chr7 (30-191)||(9574768-9574929)
chr7 (67-238)||(10586625-10586797)
chr7 (34-169)||(11803398-11803533)
chr7 (61-237)||(8978597-8978773)
chr7 (68-152)||(20582603-20582687)
chr7 (69-152)||(17190838-17190921)
chr7 (40-190)||(18202783-18202932)
chr7 (30-191)||(3190623-3190784)
chr7 (68-152)||(16058635-16058719)
chr7 (67-150)||(18368646-18368729)
chr7 (38-191)||(15869971-15870125)
chr7 (34-150)||(13289013-13289129)
chr7 (90-191)||(7318649-7318751)
chr7 (34-150)||(8053696-8053812)
chr7 (19-100)||(8313038-8313119)
chr7 (67-128)||(17077480-17077541)
chr7 (74-150)||(13277886-13277962)
chr7 (77-152)||(39272783-39272858)
chr7 (32-234)||(6013924-6014125)
chr7 (34-152)||(8877768-8877886)
chr7 (67-152)||(2574280-2574365)
chr7 (79-135)||(4986941-4986997)
chr7 (79-135)||(4991039-4991095)
chr7 (72-165)||(13418856-13418949)
chr7 (19-127)||(1587971-1588079)
chr7 (67-169)||(13759565-13759667)
chr7 (68-127)||(1847912-1847971)
chr7 (74-127)||(4449372-4449425)
chr7 (67-168)||(5107038-5107139)
chr7 (30-98)||(6006469-6006537)
chr7 (74-165)||(1861292-1861382)
chr7 (34-152)||(22066834-22066953)
chr7 (62-128)||(22339005-22339071)
chr7 (113-146)||(2574409-2574442)
chr7 (30-98)||(17830035-17830104)
chr7 (114-146)||(15869932-15869964)
chr7 (73-169)||(19153686-19153782)
chr7 (73-169)||(20753085-20753181)
[»] chr1 (36 HSPs)
chr1 (32-238)||(33191004-33191210)
chr1 (19-239)||(24281601-24281821)
chr1 (37-210)||(21449435-21449608)
chr1 (34-169)||(15543602-15543737)
chr1 (67-238)||(25404096-25404267)
chr1 (68-151)||(26612679-26612762)
chr1 (34-144)||(16112159-16112269)
chr1 (34-191)||(14779924-14780081)
chr1 (30-238)||(18100576-18100784)
chr1 (67-152)||(18528859-18528944)
chr1 (34-190)||(16179381-16179537)
chr1 (30-190)||(22664537-22664697)
chr1 (74-152)||(25403721-25403799)
chr1 (38-152)||(25960738-25960852)
chr1 (30-131)||(24214957-24215058)
chr1 (68-152)||(14781489-14781573)
chr1 (34-150)||(21334351-21334467)
chr1 (38-150)||(727850-727963)
chr1 (69-146)||(21985627-21985704)
chr1 (42-147)||(9787537-9787642)
chr1 (67-152)||(16916569-16916652)
chr1 (74-160)||(18735879-18735965)
chr1 (74-152)||(18826036-18826114)
chr1 (67-169)||(29242835-29242937)
chr1 (68-169)||(15160138-15160239)
chr1 (67-152)||(23180176-23180261)
chr1 (29-146)||(16360291-16360408)
chr1 (74-152)||(24054359-24054436)
chr1 (22-238)||(15807574-15807791)
chr1 (74-126)||(22623308-22623360)
chr1 (77-152)||(18830862-18830937)
chr1 (105-146)||(21972112-21972153)
chr1 (67-152)||(26648639-26648724)
chr1 (69-165)||(15812756-15812852)
chr1 (67-111)||(44795825-44795869)
chr1 (30-98)||(28008572-28008639)
[»] chr4 (20 HSPs)
chr4 (19-239)||(5679533-5679753)
chr4 (43-235)||(19092626-19092818)
chr4 (30-238)||(14649223-14649431)
chr4 (61-169)||(7582697-7582805)
chr4 (67-238)||(22173149-22173320)
chr4 (29-191)||(17275929-17276091)
chr4 (67-169)||(13692349-13692451)
chr4 (37-210)||(19929243-19929416)
chr4 (33-237)||(8969296-8969499)
chr4 (34-150)||(15165185-15165301)
chr4 (69-165)||(17710086-17710182)
chr4 (30-238)||(22357094-22357301)
chr4 (78-152)||(11253386-11253460)
chr4 (70-236)||(13909186-13909352)
chr4 (71-168)||(11933817-11933914)
chr4 (77-160)||(25094939-25095022)
chr4 (21-146)||(5956375-5956500)
chr4 (30-238)||(17672321-17672530)
chr4 (67-126)||(4615152-4615208)
chr4 (84-151)||(17217168-17217235)
[»] chr2 (31 HSPs)
chr2 (19-152)||(23933204-23933337)
chr2 (30-191)||(29849703-29849864)
chr2 (28-238)||(20174199-20174409)
chr2 (30-210)||(25885024-25885204)
chr2 (30-151)||(18121850-18121971)
chr2 (30-191)||(23011327-23011488)
chr2 (34-169)||(17675265-17675400)
chr2 (34-152)||(26667689-26667807)
chr2 (61-151)||(27908782-27908872)
chr2 (59-191)||(29027872-29028004)
chr2 (34-149)||(30412015-30412130)
chr2 (38-152)||(25530829-25530943)
chr2 (34-151)||(17635411-17635528)
chr2 (30-140)||(23006795-23006905)
chr2 (67-152)||(29143297-29143382)
chr2 (45-127)||(13776774-13776856)
chr2 (77-151)||(24090570-24090644)
chr2 (34-152)||(25535654-25535772)
chr2 (30-128)||(28605734-28605832)
chr2 (34-165)||(22379110-22379242)
chr2 (67-121)||(17198280-17198334)
chr2 (83-147)||(32085797-32085861)
chr2 (34-152)||(28929058-28929176)
chr2 (68-127)||(19199768-19199827)
chr2 (67-152)||(17743146-17743231)
chr2 (113-147)||(11390614-11390648)
chr2 (113-147)||(11407275-11407309)
chr2 (69-111)||(25939584-25939626)
chr2 (59-93)||(27418691-27418725)
chr2 (59-93)||(27419837-27419871)
chr2 (59-127)||(26291507-26291575)
[»] chr5 (27 HSPs)
chr5 (30-191)||(34488008-34488169)
chr5 (30-191)||(24265034-24265195)
chr5 (30-191)||(24341665-24341826)
chr5 (34-152)||(19008146-19008264)
chr5 (34-160)||(17314700-17314826)
chr5 (68-165)||(24659650-24659747)
chr5 (30-152)||(24140827-24140948)
chr5 (34-169)||(34128966-34129102)
chr5 (21-191)||(18207820-18207990)
chr5 (30-169)||(20563715-20563854)
chr5 (34-169)||(20744234-20744369)
chr5 (67-169)||(15375556-15375658)
chr5 (68-152)||(17432227-17432311)
chr5 (68-160)||(20859057-20859149)
chr5 (67-124)||(24243635-24243692)
chr5 (74-151)||(28665155-28665232)
chr5 (30-146)||(24266521-24266637)
chr5 (30-146)||(24343152-24343268)
chr5 (34-152)||(16523163-16523284)
chr5 (34-152)||(20549307-20549425)
chr5 (30-146)||(36175551-36175667)
chr5 (67-120)||(18938189-18938242)
chr5 (59-131)||(22871101-22871173)
chr5 (67-147)||(19051752-19051833)
chr5 (30-126)||(23335985-23336081)
chr5 (67-131)||(17470873-17470937)
chr5 (34-128)||(25401903-25401999)
[»] chr6 (32 HSPs)
chr6 (30-238)||(11177262-11177470)
chr6 (30-190)||(21688414-21688574)
chr6 (33-210)||(22568194-22568372)
chr6 (43-169)||(14072484-14072610)
chr6 (67-152)||(22412683-22412768)
chr6 (72-169)||(27124171-27124268)
chr6 (30-190)||(6630253-6630413)
chr6 (30-210)||(15466721-15466901)
chr6 (45-189)||(21907813-21907957)
chr6 (30-237)||(19244905-19245112)
chr6 (34-152)||(23008996-23009114)
chr6 (34-152)||(23779250-23779368)
chr6 (19-121)||(8245371-8245473)
chr6 (74-152)||(11136292-11136369)
chr6 (74-155)||(20005546-20005627)
chr6 (74-165)||(22813371-22813462)
chr6 (67-169)||(9517114-9517216)
chr6 (101-239)||(28933292-28933430)
chr6 (74-152)||(17382383-17382461)
chr6 (67-169)||(20144702-20144804)
chr6 (67-169)||(22188035-22188137)
chr6 (30-238)||(4340062-4340271)
chr6 (67-113)||(17823372-17823418)
chr6 (141-210)||(8241627-8241696)
chr6 (68-135)||(14722362-14722429)
chr6 (47-93)||(14725882-14725928)
chr6 (34-191)||(1635339-1635496)
chr6 (59-93)||(9726476-9726510)
chr6 (105-146)||(14637973-14638014)
chr6 (34-128)||(5625076-5625170)
chr6 (108-152)||(17826806-17826850)
chr6 (110-146)||(22568174-22568210)
[»] scaffold0005 (1 HSPs)
scaffold0005 (30-238)||(167861-168069)
[»] chr8 (21 HSPs)
chr8 (30-210)||(7983926-7984105)
chr8 (30-152)||(24113916-24114038)
chr8 (38-169)||(17509567-17509698)
chr8 (34-150)||(18448177-18448293)
chr8 (67-152)||(17101574-17101659)
chr8 (68-165)||(25226467-25226564)
chr8 (67-135)||(17996920-17996988)
chr8 (67-191)||(19787108-19787232)
chr8 (61-165)||(24110333-24110437)
chr8 (74-165)||(24723266-24723357)
chr8 (92-191)||(14528514-14528613)
chr8 (74-152)||(19264423-19264501)
chr8 (67-125)||(24269969-24270027)
chr8 (30-208)||(25182025-25182203)
chr8 (76-125)||(26832001-26832050)
chr8 (74-126)||(23892842-23892894)
chr8 (67-152)||(6885372-6885458)
chr8 (67-128)||(28276395-28276456)
chr8 (59-126)||(30121746-30121813)
chr8 (61-152)||(37528352-37528442)
chr8 (59-93)||(17977078-17977112)
[»] chr3 (23 HSPs)
chr3 (30-190)||(17156166-17156325)
chr3 (34-149)||(12411495-12411610)
chr3 (74-152)||(4650617-4650695)
chr3 (30-210)||(2723407-2723587)
chr3 (37-152)||(19167789-19167904)
chr3 (67-169)||(19908707-19908809)
chr3 (34-116)||(8170276-8170358)
chr3 (74-147)||(8267267-8267340)
chr3 (67-128)||(20023174-20023235)
chr3 (74-134)||(8319395-8319455)
chr3 (34-111)||(16229609-16229686)
chr3 (30-236)||(8143943-8144148)
chr3 (74-152)||(8882761-8882839)
chr3 (67-152)||(3116018-3116103)
chr3 (30-238)||(21325667-21325876)
chr3 (34-143)||(21302340-21302450)
chr3 (69-106)||(19575861-19575898)
chr3 (113-169)||(8765481-8765537)
chr3 (67-126)||(8446259-8446318)
chr3 (59-90)||(13907851-13907882)
chr3 (104-165)||(934373-934434)
chr3 (37-98)||(18736244-18736305)
chr3 (111-152)||(27413563-27413604)
[»] scaffold0062 (1 HSPs)
scaffold0062 (30-209)||(42790-42968)
[»] scaffold0671 (1 HSPs)
scaffold0671 (34-152)||(823-941)
[»] scaffold1869 (1 HSPs)
scaffold1869 (69-165)||(57-153)
[»] scaffold0024 (1 HSPs)
scaffold0024 (30-152)||(39998-40120)
[»] scaffold0034 (1 HSPs)
scaffold0034 (67-152)||(76798-76883)
[»] scaffold0008 (1 HSPs)
scaffold0008 (33-197)||(55229-55393)
[»] scaffold0035 (1 HSPs)
scaffold0035 (34-165)||(70239-70370)
[»] scaffold0056 (1 HSPs)
scaffold0056 (74-148)||(21660-21734)
[»] scaffold0032 (1 HSPs)
scaffold0032 (67-165)||(103825-103923)
[»] scaffold0263 (2 HSPs)
scaffold0263 (87-165)||(15980-16058)
scaffold0263 (68-102)||(17381-17415)
[»] scaffold0063 (1 HSPs)
scaffold0063 (68-152)||(51208-51292)
[»] scaffold0054 (1 HSPs)
scaffold0054 (67-127)||(72469-72529)
[»] scaffold0040 (1 HSPs)
scaffold0040 (67-127)||(26252-26312)
[»] scaffold0002 (1 HSPs)
scaffold0002 (61-127)||(96424-96490)
[»] scaffold0103 (1 HSPs)
scaffold0103 (34-90)||(27572-27628)
[»] scaffold0128 (1 HSPs)
scaffold0128 (69-131)||(198-260)
[»] scaffold0043 (1 HSPs)
scaffold0043 (37-98)||(89425-89486)
[»] scaffold0622 (1 HSPs)
scaffold0622 (30-98)||(1225-1294)
[»] scaffold0019 (2 HSPs)
scaffold0019 (69-110)||(163698-163739)
scaffold0019 (69-110)||(181305-181346)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 3735143 - 3734923
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3735143 agaccttcggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgagttagcaagaccctgcacgt 3735044  T
Q  119 aaggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcga 218  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3735043 aaggatcaccgtgcgatcagcaggtgcagttagctattggagagatagacctagatcaaccgagatagtataggtcctgcatgttaggatcagtgcgcga 3734944  T
Q  219 tcaataggtgcaacttgacac 239  Q
    |||||||||||||||||||||    
T  3734943 tcaataggtgcaacttgacac 3734923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 17152741 - 17152912
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattgg 158  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||| |||||| |||||||||||||||||||  |    
T  17152741 taggaacaccaatttaagtttatgtttcaattacatttgaattagttagaccccgcacgtaaggatcaccgtgcgatcagcaggtgcagttagctatcag 17152840  T
Q  159 agagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgca 230  Q
    || |||| ||| |||| ||| ||||| |||||| ||| |||||| ||||||| || ||||||||||||||||    
T  17152841 agggataaacctagataaactgagatggtatagaccccgcatgtaaggatcattgtgcgatcaataggtgca 17152912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 1586500 - 1586292
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||| ||| ||||||||||||  |||||||||| ||||||||||||||||||| |||| ||| | || |||||||||||||| |     
T  1586500 aacattggccttcattgcccttggaaacctaggaacatcaatttaagtctatgtttcaattacctttggattaacaaaatcccgcacgtaaggatcatcg 1586401  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    || ||| |||||||||||||| ||||  ||| |||||||| | ||||||  ||||||||||| ||| ||| || ||||||| || | |||||||||||||    
T  1586400 tgtgatcagcaggtgcagttatctatccgagggatagacctaaatcaacgaagatagtatagaccccgcacgtaaggatcaatgtgtgatcaataggtgc 1586301  T
Q  230 aacttgaca 238  Q
    | |||||||    
T  1586300 agcttgaca 1586292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 9574929 - 9574768
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |     
T  9574929 aacattggccttcattgcctttggaaacctaggaacgacaatttaagtttatgtttcaactacctttgaattagcaagaccccgcacataaggatcatcg 9574830  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    || ||| | || ||||||||| | || |||| || | ||| |||||||||||||||||||||    
T  9574829 tgtgatcaacatgtgcagttaaccatcggagggacaaacctagatcaaccgagatagtatag 9574768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 10586625 - 10586797
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggaga-gata 165  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | |||||| | || ||||||| ||| ||| || | ||||    
T  10586625 ccaatttaagtttatgtttcaattacctttgaattagcaaaaccccgcatgtaaggatcatcgtgcgatcaacatgtgcagtaagccattcgaaaggata 10586724  T
Q  166 gacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaacttgaca 238  Q
    |||| |||| |||||||||||||||| ||| ||| || |||||||    ||||||||||||||||||||||||    
T  10586725 gacctagataaaccgagatagtatagcccccgcacgtaaggatcaccatgcgatcaataggtgcaacttgaca 10586797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 11803533 - 11803398
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||   ||||  ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  11803533 ttggccttcattgccttgggaaacactggaaagccaatttaagtttatatttcaattacctttgaattagaaagaccccgcacgtaaggatcaccgtgcg 11803434  T
Q  134 attagcaggtgcagttagctattggagagatagacc 169  Q
    || |||| ||||| ||||| ||||||| ||||||||    
T  11803433 atcagcaagtgcaattagccattggagggatagacc 11803398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 8978597 - 8978773
Alignment:
Q  61 ggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggag 160  Q
    ||||| |||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| || ||||    
T  8978597 ggaacgccaatttaagtttatgtttcaagtaactttgaattagcaagaccccgcacgtaaggatcaccgtgcgatcagcaggtgcaattagccatcggag 8978696  T
Q  161 agatagaccca-gatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaacttgac 237  Q
     |||||||| |  |||||| | || ||||  | ||| |||||| ||||||| || |||||||| | ||||||||||||    
T  8978697 ggatagacctataatcaactgggagagta-cgaccccgcatgtaaggatcattgtgcgatcaacatgtgcaacttgac 8978773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 20582687 - 20582603
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||    
T  20582687 caatttaagtttatgtttcaattacctttgaattagcaagacccggcatgtaaggatcaccgtgcgatcagcaggtgcagttagc 20582603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 17190838 - 17190921
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |  |||||||||||||    
T  17190838 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtagggatcaccgtgcgatcaataggtgcagttagc 17190921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 18202783 - 18202932
Alignment:
Q  40 ttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagc 139  Q
    ||||||| ||||| ||||  || ||| |||||||||||||||||||||||||||||| ||||||||| |  |||||||||||||||||  |||||| |||    
T  18202783 ttcattgtctttggaaactaagcaacgccaatttaagtttatgtttcaattacctttaaattagcaaca-tctgcacgtaaggatcactgtgcgatcagc 18202881  T
Q  140 aggtgcagttagctattggagagatagacccagatcaaccgagatagtata 190  Q
    || |||||||||| |||| ||  ||||||| ||||||||| | ||||||||    
T  18202882 agatgcagttagccattgaaggaatagacctagatcaaccaatatagtata 18202932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 3190623 - 3190784
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||| ||||| | ||||||  ||||||||||| ||||| |||||| ||||||||  ||||||||||||||||||||||   |||||||| ||| |     
T  3190623 aacattggtcttcaattcctttggcaacctaggaacaccaatctaagttcatgtttcagctacctttgaattagcaagaccccaaacgtaaggctcatcg 3190722  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    ||| || ||| |||||||||||| || |||| |||||||| |||| || |||||||||||||    
T  3190723 tgcaatcagcgggtgcagttagccatcggagggatagacctagataaatcgagatagtatag 3190784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 16058635 - 16058719
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| ||||||||||||||||    
T  16058635 caatttaagtttatttttcaattacctttgaattagtaagaccccgcacgtaagggtcaccgtgcgatcagcaggtgcagttagc 16058719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 18368646 - 18368729
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagtta 150  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  18368646 ccaaattaggtttacgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatcaggaggtgaagtta 18368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 15870125 - 15869971
Alignment:
Q  38 ccttcattgcctttgtaaacctaggaactccaatttaagtttatgttt-caattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatt 136  Q
    |||| |||||| ||| ||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||| | ||||     
T  15870125 ccttgattgccattggaaatcttggaactccaatttaagtctatgttttcaattacctttgaattagcaagactccgcacgtaaggatcaccgtacgatc 15870026  T
Q  137 agcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    |  |||| || ||||| || |||| ||||  || ||||||| |||||||||||||    
T  15870025 aataggtacaattagccatcggagggatattcctagatcaaacgagatagtatag 15869971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 13289013 - 13289129
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    |||| |||||||||||| | ||||   ||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||    
T  13289013 ttggacttcattgccttgggaaacactggaaagccaatttaagtttatgtttcaattacctttaaattagcaagaccccgcacgtaaggatcatcgtgcg 13289112  T
Q  134 attagcaggtgcagtta 150  Q
    || | || |||||||||    
T  13289113 atcaacatgtgcagtta 13289129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 7318751 - 7318649
Alignment:
Q  90 tacctttgaattagcaagaccctgcacgtaagg-atcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagta 188  Q
    |||||||||||||||||| ||| |||||||||| |||||| |||||| |||||||||||||||  ||  ||| |||||||| ||||||||||||||||||    
T  7318751 tacctttgaattagcaagtccccgcacgtaagggatcaccgtgcgatcagcaggtgcagttagtcatctgagggatagacctagatcaaccgagatagta 7318652  T
Q  189 tag 191  Q
    |||    
T  7318651 tag 7318649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 8053696 - 8053812
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | |||| |||| || || ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||  ||     
T  8053696 ttggccttcattgccttgggaaacactagaaagtc-aatttaagtttatgtttcaattacctttgaattggtaagaccccgcacgtaaggatcacagtgt 8053794  T
Q  133 gattagcaggtgcagtta 150  Q
    ||| || |||||||||||    
T  8053795 gatcagtaggtgcagtta 8053812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 8313038 - 8313119
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaat 100  Q
    ||||||| || | |||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  8313038 agaccttggggatcattagccttcattgcctttgtaaacctaggaacgtcaatttaagtttatgtttcaattagctttgaat 8313119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 17077541 - 17077480
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  17077541 ccaatttaagtttatgtttcaattaccgttgaattagcaagaccctgcatgtaaggatcacc 17077480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 13277962 - 13277886
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagtta 150  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||| || |||||||||||    
T  13277962 aagtttatgtctcaattacctttgaattagcaagaccccgcacgtaaggatcaccgtgtgatcagtaggtgcagtta 13277886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 39272783 - 39272858
Alignment:
Q  77 tttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  39272783 tttatgtttcaattaccattgaattaacaagaccccgcacgtaaggatcaccatgtgatcaacaggtgcagttagc 39272858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 6014125 - 6013924
Alignment:
Q  32 cattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatg 131  Q
    |||||| ||||||| |||||| ||| | |||||  ||||||||||| |||||||||||||||||| |||||| ||||||| ||| |||||||||| |       
T  6014125 cattggacttcatttcctttggaaatccaggaatgccaatttaagtatatgtttcaattacctttaaattagaaagaccccgcatgtaaggatcatcgca 6014026  T
Q  132 cgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaa 231  Q
     | | | || ||||||||||  || |||| |||||||| ||||||||| ||||| ||||| || |||| || |||||||  | |||||||| || |||||    
T  6014025 aggtcaacatgtgcagttaggcatcggagtgatagacctagatcaacc-agatattatagaccttgcacgtaaggatcaccgtgcgatcaacagatgcaa 6013927  T
Q  232 ctt 234  Q
    |||    
T  6013926 ctt 6013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 8877886 - 8877768
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    |||||||||||| |||| | ||||   ||||  ||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||| ||||    
T  8877886 ttggccttcatttccttgggaaacactggaaggccaatttaagtttatgtttcaattacctttgaattaataagaccccacacgtaaggatcaccgtgcg 8877787  T
Q  134 attagcaggtgcagttagc 152  Q
     | | |||||| |||||||    
T  8877786 gtcatcaggtgtagttagc 8877768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 2574280 - 2574365
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||  ||| ||||||||||||||||||| |||||||| |||| |||||||||||  ||||||||||||||| ||||||    
T  2574280 ccaatttaagtccatgcttcaattacctttgaattaacaagaccccgcacataaggatcaccgcgcgattagcaggtgctgttagc 2574365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 4986997 - 4986941
Alignment:
Q  79 tatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgat 135  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4986997 tatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcaccgtgcgat 4986941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 4991095 - 4991039
Alignment:
Q  79 tatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgat 135  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4991095 tatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcaccgtgcgat 4991039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 13418949 - 13418856
Alignment:
Q  72 ttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    |||||||||| |||||||||||||||||||| |||||||  |||| |||||||| || |||||| |||||||| ||||||| ||  ||||||||    
T  13418949 ttaagtttatatttcaattacctttgaattaccaagacctcgcacataaggatctccgtgcgatcagcaggtgaagttagccatcagagagata 13418856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 1588079 - 1587971
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgt 118  Q
    |||||||| | |||| ||| |||||||||| ||| |||  |||||||  |||||||||||||||||| | |||||||||||||||  ||||||  |||||    
T  1588079 agacctttaggaacactggacttcattgccattggaaaattaggaacgtcaatttaagtttatgttttagttacctttgaattagacagaccccacacgt 1587980  T
Q  119 aaggatcac 127  Q
    |||||||||    
T  1587979 aaggatcac 1587971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 13759565 - 13759667
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||||||| | ||||||  |||||| | || ||| ||||||| ||  ||| |||||    
T  13759565 ccaatttaagtttatgtttcaattacctttcaattaacaagaccttgcacgtcaagatcactgtgcgatcaacatgtgtagttagccatcagagggatag 13759664  T
Q  167 acc 169  Q
    |||    
T  13759665 acc 13759667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 1847912 - 1847971
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    |||||||| |||||||||||||||||||| || ||||||||||  |||||||||||||||    
T  1847912 caatttaattttatgtttcaattacctttaaaatagcaagacctcgcacgtaaggatcac 1847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 4449425 - 4449372
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||    
T  4449425 aagtttatgtttcaattacctttaaattagcaagaccccacacgtaaggctcac 4449372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 5107139 - 5107038
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    |||||||||||  ||| ||||||||||||||||||| ||||||||| || |||| ||||||| |  ||  |||| ||||||||||| || |||| |||||    
T  5107139 ccaatttaagtccatgcttcaattacctttgaattaacaagaccctacaagtaaagatcaccgtatgaccagcaagtgcagttagccatcggagggatag 5107040  T
Q  167 ac 168  Q
    ||    
T  5107039 ac 5107038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 6006537 - 6006469
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttga 98  Q
    ||||||||||||||||||||||| | |  ||||||  ||||||||||| || |||||||||||||||||    
T  6006537 aacattggccttcattgcctttggacatttaggaatgccaatttaagtctacgtttcaattacctttga 6006469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 1861382 - 1861292
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||||||||||||||||||||||| |||||||||| |   |||| |||||||  ||||| ||||||||| |||||| || |||| ||||    
T  1861382 aagtttatgtttcaattacctttgaatcagcaagaccccg-ttgtaatgatcaccgcgcgatcagcaggtgctgttagccatcggagggata 1861292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 22066834 - 22066953
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | ||||   ||||  ||||| ||| || ||||| ||||||||||||||||||||||||| |  ||||||||||||||| |||    
T  22066834 ttggccttcattgccttgggaaacactggaaagccaatataaagtctatgtctcaattacctttgaattagcaagacgccacacgtaaggatcaccgtgc 22066933  T
Q  133 gattagcaggtgcagttagc 152  Q
     || ||   |||||||||||    
T  22066934 aatcagtttgtgcagttagc 22066953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 22339005 - 22339071
Alignment:
Q  62 gaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    |||| ||||||||||| ||||||||||||||| ||||   || |||||||  |||||||||||||||    
T  22339005 gaacaccaatttaagtctatgtttcaattacccttgagggagtaagaccccacacgtaaggatcacc 22339071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 2574409 - 2574442
Alignment:
Q  113 gcacgtaaggatcaccatgcgattagcaggtgca 146  Q
    |||||||||||||||| |||||||||||||||||    
T  2574409 gcacgtaaggatcaccgtgcgattagcaggtgca 2574442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 17830104 - 17830035
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttga 98  Q
    ||||||| ||||||||||||||| |||  ||||||  ||||| ||| || ||||||||||||||||||||    
T  17830104 aacattgaccttcattgcctttggaaatttaggaatgccaatataaagtctatgtttcaattacctttga 17830035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 15869964 - 15869932
Alignment:
Q  114 cacgtaaggatcaccatgcgattagcaggtgca 146  Q
    |||||||||||||||||||||| ||||||||||    
T  15869964 cacgtaaggatcaccatgcgatcagcaggtgca 15869932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 19153782 - 19153686
Alignment:
Q  73 taagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacc 169  Q
    |||||| ||| ||||||||||||||||||| ||||| |   ||||||| |||||||||  ||  ||||| |||||||||| || |||  ||||||||    
T  19153782 taagttcatgcttcaattacctttgaattaacaagatcacacacgtaaagatcaccatctgaccagcagatgcagttagccatcggatggatagacc 19153686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 20753181 - 20753085
Alignment:
Q  73 taagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacc 169  Q
    |||||| ||| ||||||||||||||||||| ||||| |   ||||||| |||||||||  ||  ||||| |||||||||| || |||  ||||||||    
T  20753181 taagttcatgcttcaattacctttgaattaacaagatcacacacgtaaagatcaccatctgaccagcagatgcagttagccatcggatggatagacc 20753085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 33191210 - 33191004
Alignment:
Q  32 cattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatg 131  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33191210 cattggccttcattgcctttggaaacctaggaacgccaatttaagtttatgttttaattacttttgaattagcaagaccctgcacgtaaggatcaccatg 33191111  T
Q  132 cgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaa 231  Q
    |||| | ||||||  |||||| ||  ||| |||| ||| ||||||||||||||||||||| ||||||| || ||||||| || ||||| |  |||||||     
T  33191110 cgatcaacaggtgttgttagccatcagagggataaacctagatcaaccgagatagtatagaccctgcacgtaaggatcactgtgcgattagcaggtgcag 33191011  T
Q  232 cttgaca 238  Q
    |||||||    
T  33191010 cttgaca 33191004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 24281821 - 24281601
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgt 118  Q
    ||||||| || ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| || |||| ||| ||    
T  24281821 agaccttcgggaacattggccttcattgtctttggaaacctaggaacaccaatttaagtttatgtttcaattgcctttgagttagaaaaaccccgcatgt 24281722  T
Q  119 aaggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcga 218  Q
    |||||||||| || ||| |||||||||||||||| ||   || |||||||| ||||| ||||||||||||||| ||| |||||| ||||||| || ||||    
T  24281721 aaggatcaccgtgggatcagcaggtgcagttagccatcaaagggatagacctagatctaccgagatagtatagaccccgcatgtaaggatcactgtgcga 24281622  T
Q  219 tcaataggtgcaacttgacac 239  Q
     ||  ||||| | ||||||||    
T  24281621 ccagcaggtggagcttgacac 24281601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 21449608 - 21449435
Alignment:
Q  37 gccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgat 135  Q
    |||||||||||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||  ||| ||||||||||| ||| ||    
T  21449608 gccttcattgcctttggaaacactag-aacgccaatttaagtttatgtttcatttacctttgaattaacaagacccctcacataaggatcaccgtgcaat 21449510  T
Q  136 tagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    ||||||||||||||||| ||||| | |||| ||  ||||||||||||||||||||| ||| ||| || |||||||    
T  21449509 tagcaggtgcagttagccattggtgggataaacatagatcaaccgagatagtatagaccccgcacgtaaggatca 21449435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 15543602 - 15543737
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||   |||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  15543602 ttggccttcattgccttgggaaactgtggaaatccaatttaagtttatgtttcaattacctttgaattagcaagaacccgcacgtaaggatcaccgtgcg 15543701  T
Q  134 attagcaggtgcagttagctattggagagatagacc 169  Q
    || |||||||||| ||||| || |||| ||||||||    
T  15543702 atcagcaggtgcaattagccatcggagggatagacc 15543737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 25404096 - 25404267
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||| | || ||||||||||| ||  ||| |||||    
T  25404096 ccaatttaagtttatgtttcaattacctttgaattaacaagaccccgcacgtagggatcaccgtgcgatcaacatgtgcagttagccatcagagggatag 25404195  T
Q  167 acccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaacttgaca 238  Q
    ||  ||||||||| ||||  ||||| ||| ||| || ||||||| || |||||||| ||||||| |||||||    
T  25404196 acttagatcaaccaagatcatatagaccccgcacgtaaggatcactgtgcgatcaacaggtgcagcttgaca 25404267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 26612679 - 26612762
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttag 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  26612679 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatcagcatgtgcagttag 26612762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 16112269 - 16112159
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||    
T  16112269 ttggcctttattgcctttggaaacctaggaacaccaatttaagtttatgtttcaattaccattgaattagcaagaccccgcacgtaaggatctccgtgcg 16112170  T
Q  134 attagcaggtg 144  Q
    || | ||||||    
T  16112169 atcaacaggtg 16112159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 14780081 - 14779924
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||   ||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||||||| ||||||  |||    
T  14780081 ttggccttcattgccttgggaaacactggaacgccaatttaagtttatgtttcaattacctttgaattaacaagaccccacacgtaagaatcaccgcgcg 14779982  T
Q  134 attagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    || || ||||||| ||||| ||||||  | || ||| |||||||||||||||||||||    
T  14779981 atcagaaggtgcatttagccattggatggttaaacctagatcaaccgagatagtatag 14779924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 18100576 - 18100784
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| ||||||||||||||| |||||| ||||| || ||||| ||||||||||||||||||  ||||||| |||||||| ||||||||||||||       
T  18100576 aacattgaccttcattgcctttggaaaccttggaacgccgatttatgtttatgtttcaattaccactgaattaacaagaccccgcacgtaaggatcattg 18100675  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    |||||  |||| ||||||||| | ||  |||  ||| ||| ||||||| ||||||||||||| ||| ||| || |||||||  | | |||||  ||||||    
T  18100676 tgcgaccagcatgtgcagttatccatcagaggaataaacctagatcaatcgagatagtatagaccccgcacgtaaggatcaccgtgtgatcagcaggtgc 18100775  T
Q  230 aacttgaca 238  Q
    |||||||||    
T  18100776 aacttgaca 18100784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 18528859 - 18528944
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||| |||||||    
T  18528859 ccaatttaagtttatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcaccgtgcaatcagcaggtgtagttagc 18528944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 16179537 - 16179381
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | |||    ||||  |||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||  | ||||    
T  16179537 ttggccttcattgccttggaaaaaactggaatgccaatttaagttcatgtttcaattacctttaaattaacaagaccccgcacgtaaggatcgtcgtgcg 16179438  T
Q  134 attagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtata 190  Q
    || ||||| |||||||||| ||  ||| |||||||| ||||||| ||||||||||||    
T  16179437 atcagcagatgcagttagccatcagagggatagacctagatcaatcgagatagtata 16179381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 22664697 - 22664537
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| ||| || ||||  ||||||||||| |||||| ||||||| ||||||||||||| || |  ||| |||||||||       
T  22664697 aacattggccttcattgcctttggaaatcttggaaaaccaatttaagtctatgttacaattacttttgaattagcaaaactccacacataaggatcaatg 22664598  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtata 190  Q
    |||||  | || ||| ||||||||||| ||| |||||||| |||||||| |||||||||||    
T  22664597 tgcgaccaacatgtgaagttagctatttgagggatagacctagatcaactgagatagtata 22664537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 25403721 - 25403799
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||| |||||||    
T  25403721 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccgtgtgatcagcatgtgtagttagc 25403799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 25960738 - 25960852
Alignment:
Q  38 ccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatta 137  Q
    ||||||||||||||| |||| |||||||  |||||||||| ||||| ||||||||||||||||||| ||||||| ||| | ||||||||   |||||| |    
T  25960738 ccttcattgcctttggaaacgtaggaacgtcaatttaagtctatgtatcaattacctttgaattagtaagaccccgcatgcaaggatcattgtgcgatca 25960837  T
Q  138 gcaggtgcagttagc 152  Q
    |||||||||||||||    
T  25960838 gcaggtgcagttagc 25960852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 24215058 - 24214957
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||| |||||||||||| ||| || ||||  ||||||||||| ||||||||||||||||||||||| |||||||||  ||||||||||||| ||    
T  24215058 aacattggccatcattgcctttggaaatcttggaaagccaatttaagtctatgtttcaattacctttgaattcgcaagacccctcacgtaaggatcatca 24214959  T
Q  130 tg 131  Q
    ||    
T  24214958 tg 24214957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 14781489 - 14781573
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| ||| |||||| |||| |||||||||||    
T  14781489 caatttaagtttatgtttcaattacctttgaattagcaagaccccgcctgtaaggattaccgtgcgatcagcaagtgcagttagc 14781573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 21334351 - 21334467
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||   ||||  ||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||  ||||    
T  21334351 ttggccttcattgccttgggaaacactggaaaaccaatttaaatttatgtttcaattgcctttgaattagcaagaccccgcacataaggatcacagtgcg 21334450  T
Q  134 attagcaggtgcagtta 150  Q
    || | ||||||||||||    
T  21334451 atcaacaggtgcagtta 21334467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 727963 - 727850
Alignment:
Q  38 ccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatt 136  Q
    ||||||||||||| | |||| | ||||  ||||| ||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||     
T  727963 ccttcattgccttgggaaacattggaaagccaatataaagttcatgtttcaattacctttgaattaacaagaccccgcacgtaaggatcaacgtgcgatc 727864  T
Q  137 agcaggtgcagtta 150  Q
    ||||||||||||||    
T  727863 agcaggtgcagtta 727850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 21985627 - 21985704
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgca 146  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||| ||||| ||||    
T  21985627 aatttaagtttatgtttcaattacctttgaattagcaagaccccgcaagtaaggatcaccgtacgatcagcagatgca 21985704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 9787537 - 9787642
Alignment:
Q  42 cattgccttt-gtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagca 140  Q
    |||||||||| | ||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||| | |||||||| ||| |||||| | ||    
T  9787537 cattgcctttggaaaaccta-gaacgccaatttaagtctatgtttcaattacctttcaattagcaagaccctgaatgtaaggattaccgtgcgatcaaca 9787635  T
Q  141 ggtgcag 147  Q
    |||||||    
T  9787636 ggtgcag 9787642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 16916569 - 16916652
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||| |||||| | || |||||||||||    
T  16916569 ccaatttaagttt--gtctcaattacctttgaattagcaagaccctgcatgtaaggatcaccgtgcgatcaacatgtgcagttagc 16916652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 18735879 - 18735965
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggag 160  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||| | || ||||||||| | |||||||    
T  18735879 aagtttatgtttcaattatctttgaattagcaagaccccgcacgtaaggatcatcgtgcgatcaacaagtgcagttatccattggag 18735965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 18826114 - 18826036
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||| || | ||||||||||||||    
T  18826114 aagtttatgtttcaattacctttgaattaacaagacctcgcacgtaaggatcaccgtgcaatcaacaggtgcagttagc 18826036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 29242937 - 29242835
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||| |||||||||||||||||||||||||  | ||| || | ||||||||| |||||||||||||| ||||||||||||| ||  ||| |||||    
T  29242937 ccaatttaaatttatgtttcaattacctttgaattgacgagatcccgtacgtaaggaccaccatgcgattagtaggtgcagttagccatcagagggatag 29242838  T
Q  167 acc 169  Q
    |||    
T  29242837 acc 29242835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 15160138 - 15160239
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagataga 167  Q
    |||||||| ||||| |||||||||||||||||||| ||||| || |||||||||||||| | || ||| | |||||| ||||||| || |||||||||||    
T  15160138 caatttaattttatatttcaattacctttgaattaacaagatcccgcacgtaaggatcatcgtgtgatcaacaggtgaagttagccatcggagagataga 15160237  T
Q  168 cc 169  Q
    ||    
T  15160238 cc 15160239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 23180261 - 23180176
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||  ||||||||||||||| |||||| || ||||| |||||||    
T  23180261 ccaatttaagtttatgtttcaattaccattgaattaaaaagaccccacacgtaaggatcaccgtgcgatcagtaggtgtagttagc 23180176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 16360408 - 16360291
Alignment:
Q  29 aaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||| |||||||||||||| ||| ||| |||| | ||||||||| ||| |||||||||| ||||||  |  ||||||| |||||||||||| |||    
T  16360408 aaacattggtcttcattgcctttgaaaatctaagaacgcgaatttaagtctatatttcaattacttttgaaagactaagaccccgcacgtaaggattacc 16360309  T
Q  129 atgcgattagcaggtgca 146  Q
     |||||| |||| |||||    
T  16360308 gtgcgatcagcatgtgca 16360291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 24054436 - 24054359
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| ||||  |||||| |||||| ||||||||||||||||    
T  24054436 aagtttatgtttcatttatctttgaattagcaagaccccgcatgtaa-tatcaccgtgcgatcagcaggtgcagttagc 24054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 15807574 - 15807791
Alignment:
Q  22 cctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtt-tatgtttcaattacctttgaattagcaagaccctgcacgtaa 120  Q
    ||||| |||||||||| ||||||| ||| || |||  ||||||  ||||| ||| || ||||||||||||||||||||  ||| |||||||  ||||| |    
T  15807574 cctttagaaacattggtcttcatttcctctggaaatttaggaatgccaatataaattctatgtttcaattacctttgaggtagtaagaccccacacgtga 15807673  T
Q  121 ggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatc 220  Q
    |||||||| || ||  || | |||||  ||   ||||||| |||| ||| | ||||||||||||| ||||| ||| |||||| |||||||  | | ||||    
T  15807674 ggatcaccgtgtgaccagtatgtgcaactaaacattggagggataaaccaaaatcaaccgagatattatagaccccgcatgtaaggatcaccgtgtgatc 15807773  T
Q  221 aataggtgcaacttgaca 238  Q
    |  |||||||||||||||    
T  15807774 agcaggtgcaacttgaca 15807791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 22623360 - 22623308
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatca 126  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  22623360 aagtttatgtttcaattacctttgaattataaagaccccgcacgtaaggatca 22623308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 18830937 - 18830862
Alignment:
Q  77 tttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||| | |||||||||| |||| |||||||| ||| |||||||||||| |||||| |||||||||| |||||    
T  18830937 tttatgttactattacctttgtattaacaagaccccgcatgtaaggatcaccgtgcgatcagcaggtgcaattagc 18830862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 21972112 - 21972153
Alignment:
Q  105 aagaccctgcacgtaaggatcaccatgcgattagcaggtgca 146  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  21972112 aagaccctgcacgtaaggatcaccctgcgatcagcaggtgca 21972153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 26648639 - 26648724
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||| ||||||| | ||||||||||||||||||||| ||||||||  | ||||| ||||||  || ||  ||||||||||||||||    
T  26648639 ccaaattaagttcacgtttcaattacctttgaattaacaagaccccacgcgtaaagatcactgtgtgaccagcaggtgcagttagc 26648724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 15812756 - 15812852
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    |||||||||| || ||||||| |||||||||||| ||||||||  ||||||| ||||||  || ||  |||| ||||||||||| || |||| ||||    
T  15812756 aatttaagttcatttttcaatcacctttgaattaacaagaccccacacgtaaagatcactgtgtgaccagcatgtgcagttagccatcggagggata 15812852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 44795869 - 44795825
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccc 111  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||    
T  44795869 ccaatttaagttcatgcttcaattacctttgaattaacaagaccc 44795825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 28008639 - 28008572
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttga 98  Q
    ||||||||  ||||||||||| | ||| || |||||  |||||||||| ||||||||||||||||||||    
T  28008639 aacattggaattcattgcctt-gaaaatcttggaacatcaatttaagtctatgtttcaattacctttga 28008572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5679753 - 5679533
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgt 118  Q
    ||||||| || |||| ||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  5679753 agaccttcgggaacactggcctttattgcctttggaaacctaggaacgccaatttaagtttatgtttcaattacctttgaattatcaagaccccgcacgt 5679654  T
Q  119 aaggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcga 218  Q
    ||||||||||||||||| || || || ||||||| |||||||  || |||| |||||||| | |||||||||  ||  |||||| | ||||| || ||||    
T  5679653 aaggatcaccatgcgatcagtagctgtagttagccattggaggaattgacctagatcaacagggatagtataaaccacgcatgtaaagatcactgtgcga 5679554  T
Q  219 tcaataggtgcaacttgacac 239  Q
    |||  ||||||| ||| ||||    
T  5679553 tcagcaggtgcagcttaacac 5679533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 19092818 - 19092626
Alignment:
Q  43 attgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcagg 142  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||  ||||||| ||||||    
T  19092818 attgactttggaaacctaggaacgtcaatttaagtttatgtttcaattacctttgaattagcaagaccccacacgtaaagatcagtatgcgatgagcagg 19092719  T
Q  143 tgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaacttg 235  Q
    |||||||||| || | || |||| ||| ||||||||  ||||||||||| ||||||| || |||||||    |||||||| ||||||| ||||    
T  19092718 tgcagttagccatcgaagggataaacctagatcaacaaagatagtatagaccctgcacgtaaggatcatcatgcgatcaacaggtgcagcttg 19092626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 14649431 - 14649223
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||| ||||| |||||| ||| || ||||| |||||| |||| ||||||| ||||||||||||||||||||||||| |||  ||||||||| |     
T  14649431 aacattggccctcattccctttggaaatcttggaacgccaattcaagtctatgttttaattacctttgaattagcaagaccccgcatataaggatcatcg 14649332  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    |||||| || ||||||||||||| || |||| |||| ||| ||||||||||||||||||||| |||  || ||  ||||||  | |||||||| ||||||    
T  14649331 tgcgatcagtaggtgcagttagccatcggagggatatacctagatcaaccgagatagtatagaccccacacgtatggatcaccgtgcgatcaacaggtgc 14649232  T
Q  230 aacttgaca 238  Q
    | |||||||    
T  14649231 agcttgaca 14649223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 7582805 - 7582697
Alignment:
Q  61 ggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggag 160  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| || ||||    
T  7582805 ggaacgccaatttaagtttatgtttcaattaactttgaattagcaagaccccgcacgtaaggatcaccgtgcgatcagcaggtgcaattagccatcggag 7582706  T
Q  161 agatagacc 169  Q
     ||||||||    
T  7582705 ggatagacc 7582697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 22173149 - 22173320
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||||  ||| ||  ||||  ||| ||||| || | || |||||    
T  22173149 ccaatttaagtttatgtttcaattacctttgaattagcaagacctcgcacgtgtggatcactgtgcaatctgcagacgcaattagccatcgaagggatag 22173248  T
Q  167 acccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaacttgaca 238  Q
    ||| ||||||||||||||||||||| ||||||| || |||||||  | |||||||| | |||||||||||||    
T  22173249 acctagatcaaccgagatagtatagaccctgcacgtaaggatcaccgtgcgatcaacatgtgcaacttgaca 22173320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 17276091 - 17275929
Alignment:
Q  29 aaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||||||||||| |||| | | | || ||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  17276091 aaacattggccttcattaccttcggatatcttggaaagccaatttaagtctatgtttcaattacctttgaattagcaagaccccgcacataaggatcacc 17275992  T
Q  129 atgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
       |||| ||||| |||||||||| ||  ||| || ||||  |||||||||||||||||||||    
T  17275991 gcacgatcagcagatgcagttagccatcagagggacagacatagatcaaccgagatagtatag 17275929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 13692349 - 13692451
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| || ||||| ||||||| || |||| |||||    
T  13692349 ccaatttaagtttatgtttcaattacctttgaattagcaagaccccgcacataaggatcaccgtgcgatcagtaggtggagttagccatcggagggatag 13692448  T
Q  167 acc 169  Q
    |||    
T  13692449 acc 13692451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 19929243 - 19929416
Alignment:
Q  37 gccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatt 136  Q
    |||||||||||||||| ||| || ||||   |||||||||| |||||||||||||||||||||||||||||||||  || | |||||||| | ||| ||     
T  19929243 gccttcattgcctttggaaatcttggaatctcaatttaagtatatgtttcaattacctttgaattagcaagacccgtcatggaaggatcatcgtgcaatc 19929342  T
Q  137 agcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    |||||||||||||||   | ||||  ||||||| |||| |||||||||||||||| || ||| ||| |||||||    
T  19929343 agcaggtgcagttagtcgtcggaggaatagacctagataaaccgagatagtatagaccatgcttgtaaggatca 19929416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 8969296 - 8969499
Alignment:
Q  33 attggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||| |||||||||||||  ||| |||||||| |||||| |||| ||||||| ||||||||||||||||| |||||||  ||||||||||||||| | |    
T  8969296 attggtcttcattgcctttagaaatctaggaacgccaattgaagtctatgtttgaattacctttgaattagtaagaccccacacgtaaggatcaccgtac 8969395  T
Q  133 gattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaac 232  Q
    ||| | ||||||||  |||| ||||||| |||| ||| | |||| | |||| |||| | |||| ||| || ||||||| || | |||||| |||||||||    
T  8969396 gatcaacaggtgcaactagccattggagggatatacctaaatcatctgagagagta-aagccccgcacgtaaggatcattgtgtgatcaacaggtgcaac 8969494  T
Q  233 ttgac 237  Q
    |||||    
T  8969495 ttgac 8969499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 15165301 - 15165185
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | |||    ||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||    
T  15165301 ttggccttcattgccttggaaaaaactggaatgccaatttaattttatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcatcgtgcg 15165202  T
Q  134 attagcaggtgcagtta 150  Q
    || ||||||||||||||    
T  15165201 atcagcaggtgcagtta 15165185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 17710182 - 17710086
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| | |||||||||||||| || |||| ||||    
T  17710182 aatttaagtttatgtttcaattacctttgaattagcaagaccccgcacttaaggatcaccgtgcgatcaacaggtgcagttagccatcggagggata 17710086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 22357094 - 22357301
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| |||||||||  |||| ||| || ||||| ||||||||| | ||||| ||||||||||||||||||  ||||||| |||||||||||||| ||    
T  22357094 aacattgaccttcattggttttggaaatcttggaacgccaatttaattctatgtgtcaattacctttgaattacaaagaccccgcacgtaaggatcatca 22357193  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    |||||| | || ||| | ||||| ||  ||| |||||||| ||| ||  ||||||||||||| ||| ||| || |||||||  | |||||||| ||||||    
T  22357194 tgcgatcaaca-gtggatttagccatcagagggatagacctagaccagtcgagatagtatagaccccgcacgtaaggatcaccgtgcgatcaacaggtgc 22357292  T
Q  230 aacttgaca 238  Q
    | |||||||    
T  22357293 agcttgaca 22357301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 11253386 - 11253460
Alignment:
Q  78 ttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||| | ||||||||||||||    
T  11253386 ttatgtctcaattacctttgaattagcaagatcccgcacgtaaggatcaccatgtgatcaacaggtgcagttagc 11253460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 13909352 - 13909186
Alignment:
Q  70 atttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacc 169  Q
    |||||||| || ||||||||||||||||||||| |||||||| ||||||||||||||  ||| | | |||| ||||| ||||  ||||||| |||| |||    
T  13909352 atttaagtctacgtttcaattacctttgaattaacaagaccccgcacgtaaggatcattatgtggtcagcaagtgcaattagacattggagggatatacc 13909253  T
Q  170 cagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgcaacttga 236  Q
     | |||||| |||| ||||||| |||  ||  | |||||||  | |||||||| |||||||||||||    
T  13909252 taaatcaacggagacagtatagaccccacacttaaggatcaccgtgcgatcaacaggtgcaacttga 13909186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 11933914 - 11933817
Alignment:
Q  71 tttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagac 168  Q
    |||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||  |||||| | || ||||||||||| || | ||||||||||    
T  11933914 tttaagttcatgcttcaattacctttgaattaacaagaccccgcacgtaaggatcacggtgcgatcaacaagtgcagttagccatcgcagagatagac 11933817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 25095022 - 25094939
Alignment:
Q  77 tttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggag 160  Q
    ||||| ||| |||||||||||||||||||||||||  ||| ||||||||||  |||||| ||||||||||||||||||| ||||    
T  25095022 tttatattttaattacctttgaattagcaagaccccacacttaaggatcactgtgcgatcagcaggtgcagttagctatcggag 25094939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 5956500 - 5956375
Alignment:
Q  21 acctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaa 120  Q
    |||||| | |||||||||||| ||||  |||| |||  ||||||   ||||||||||||||||||||||||| |||||   |  ||||||| ||||||||    
T  5956500 acctttaggaacattggccttaattgattttgaaaatttaggaatgtcaatttaagtttatgtttcaattacttttgagggaataagaccccgcacgtaa 5956401  T
Q  121 ggatcaccatgcgattagcaggtgca 146  Q
    ||||| ||||| ||||||||||||||    
T  5956400 ggatcgccatgtgattagcaggtgca 5956375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 17672530 - 17672321
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||||||||||||||||| |||  ||||||  ||||| ||| || ||||||||||||||||||||  | | |||||||  || |||||||||||     
T  17672530 aacattggccttcattgcctttggaaatttaggaatgccaatataaggtctatgtttcaattacctttgaggtggtaagaccccacatgtaaggatcact 17672431  T
Q  129 atgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtg 228  Q
     || ||  ||||||||||   |   ||||||| |||| ||| | ||||||||||||||||||  ||||||| || | ||||| || |||||||  |||||    
T  17672430 gtgtgaccagcaggtgcaaccaaaaattggagggataaaccgaaatcaaccgagatagtatacaccctgcacgtaacgatcactgtgcgatcagcaggtg 17672331  T
Q  229 caacttgaca 238  Q
    || |||||||    
T  17672330 cagcttgaca 17672321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 4615208 - 4615152
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatca 126  Q
    ||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||    
T  4615208 ccaatttaagtttatgtttcaattacctttgaattagc---accccgcacgtaaggatca 4615152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 17217235 - 17217168
Alignment:
Q  84 ttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttag 151  Q
    |||||||||||||||||||||| |||||  ||||||||||||| | || ||| |||||||||| ||||    
T  17217235 ttcaattacctttgaattagcaggaccccacacgtaaggatcatcgtgtgatcagcaggtgcaattag 17217168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 23933204 - 23933337
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgt 118  Q
    ||||||| ||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23933204 agaccttcggaaacattcgctttcattgcctttggaaacctaggaacgccaatttaagtttatgtttcaattacctttgaattagaaagaccccgcacgt 23933303  T
Q  119 aaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||| | |||||| ||||||||||||||||    
T  23933304 aaggatcatcgtgcgatcagcaggtgcagttagc 23933337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 29849864 - 29849703
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||||||||| ||| || ||||||||||||  | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||     
T  29849864 aacattggccttcatttcctctggaaacctaggaacgtcgatttaagtttatgtttcaattacctttgaatttgcaagaccccgcacgtaaggattaccg 29849765  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    |||||| |||| ||| ||||||| || |||| |||||||| |||||||||||||||| ||||    
T  29849764 tgcgatcagcaagtgtagttagccatcggagggatagacctagatcaaccgagatagcatag 29849703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 20174199 - 20174409
Alignment:
Q  28 gaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    ||||||||||||||||||||||||| ||| |||||||| | ||||||| | |||||||||||||||||||||||||||||||||  ||||||||| |||     
T  20174199 gaaacattggccttcattgcctttggaaatctaggaacacaaatttaattctatgtttcaattacctttgaattagcaagaccccacacgtaaggctcat 20174298  T
Q  128 catgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggt 227  Q
      ||||||  ||| |||||| |||| || |||| |||||||| ||||||||||||||||||||| || | || || ||||||| || || ||||  ||||    
T  20174299 tgtgcgatcggcatgtgcagatagccatcggagggatagacctagatcaaccgagatagtatagaccttacacgtaaggatcactgtgcaatcagcaggt 20174398  T
Q  228 gcaacttgaca 238  Q
     ||||||||||    
T  20174399 acaacttgaca 20174409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 25885024 - 25885204
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| |||||| |||||||| ||| ||||||||  |||||||||| |||||||||||||||||| ||||||||||||||| || |||| |||||||     
T  25885024 aacattgaccttcactgcctttggaaatctaggaacgtcaatttaagtctatgtttcaattacctttaaattagcaagaccctacatgtaaagatcaccg 25885123  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    |||||| | |||||||||||||| ||| ||| |||| ||  |||| | | |||||||||||| || |||| || |||||||    
T  25885124 tgcgatcaacaggtgcagttagccattagagggataaacatagattatctgagatagtatagaccatgcacgtaaggatca 25885204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 18121850 - 18121971
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||||||||||||||   ||||   ||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||      
T  18121850 aacattggccttcattgccttgagaaacactggaaaaccaatttaagtttatgtttcaattacctttgaattagcaagaccccgcatgtaaggatcactg 18121949  T
Q  130 tgcgattagcaggtgcagttag 151  Q
    |||||||||||||||| |||||    
T  18121950 tgcgattagcaggtgctgttag 18121971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 23011327 - 23011488
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| ||| ||||||||  ||||||||   ||||||||||||||||||||||||| || |||||||||||| |||||||      
T  23011327 aacattggccttcattgcctttggaaatctaggaacgtcaatttaaccctatgtttcaattacctttgaattagaaaaaccctgcacgtatggatcactg 23011426  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    | |||| | ||| |||||||||| ||   || |||| ||| |||||||||||||||||||||    
T  23011427 ttcgatcaacagatgcagttagccatcaaagtgatatacctagatcaaccgagatagtatag 23011488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 17675265 - 17675400
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | |||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||     
T  17675265 ttggccttcattgccttgggaaacactag-aacgccaatttaagtttatgtttccattacctttgaattagcaagacgccgcacctaaggatcaccatgt 17675363  T
Q  133 gattagcaggtgcagttagctattggagagatagacc 169  Q
    ||| ||||| |||||||||  || |||| ||||||||    
T  17675364 gatcagcagatgcagttagtcatcggagggatagacc 17675400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 26667807 - 26667689
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||| ||| | ||||   ||||  |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||    
T  26667807 ttggccttcattgtcttgggaaacactggaaagccaatttaagtttatgtttcaattacctttgagttagcaagaccccgcacgtaaggatcactgtgcg 26667708  T
Q  134 attagcaggtgcagttagc 152  Q
    || || |||||||||||||    
T  26667707 atcagtaggtgcagttagc 26667689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 27908782 - 27908872
Alignment:
Q  61 ggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttag 151  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||  || |||||||||||||||    
T  27908782 ggaacgccaatttaagtttatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcgccgtgtaatcagcaggtgcagttag 27908872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 29028004 - 29027872
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattgg 158  Q
    ||||||| ||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||| | | | || |||||||||||||||| ||  |    
T  29028004 taggaacgccaatttaagtctatgtttcaattacctttaatttaacaagaccccgcacgtaaggatcatcgtacaatcagcaggtgcagttagccatcag 29027905  T
Q  159 agagatagacccagatcaaccgagatagtatag 191  Q
    || |||| ||| | |||||||||||||||||||    
T  29027904 agggataaacctatatcaaccgagatagtatag 29027872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 30412130 - 30412015
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||| ||| | ||||   ||||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  30412130 ttggccttcattgtcttgggaaacactggaaagccaatttaagtttatgtttcagttacctttgaattagcaagaccccgcacgtaaggatcaccgtgcg 30412031  T
Q  134 attagcaggtgcagtt 149  Q
     | |||||||| ||||    
T  30412030 ttcagcaggtgtagtt 30412015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 25530943 - 25530829
Alignment:
Q  38 ccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatt 136  Q
    ||||||||||||| |||||| |||| ||  ||||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||| ||||||     
T  25530943 ccttcattgccttggtaaacactagaaag-ccaatttaagtttatgtctcaattacctttgaattagaaagaccccgcacataaggatcaccgtgcgatc 25530845  T
Q  137 agcaggtgcagttagc 152  Q
    || ||||||| |||||    
T  25530844 agtaggtgcatttagc 25530829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 17635411 - 17635528
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | |||| |||| ||  ||| |||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||     
T  17635411 ttggccttcattgccttgggaaacactag-aagaccagtttaagtttatgtttccattacctttgaattagcaagacgccgcacctaaggatcaccatgt 17635509  T
Q  133 gattagcaggtgcagttag 151  Q
    ||| ||||| |||||||||    
T  17635510 gatcagcagatgcagttag 17635528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 23006795 - 23006905
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| ||| ||||||||   ||||||| | ||| ||||||||||||||||||||  ||||||||| | ||||||||||||     
T  23006795 aacattggccttcattgcctttgaaaatctaggaacaaaaatttaattatatatttcaattacctttgaattaaaaagaccctgtatgtaaggatcaccg 23006894  T
Q  130 tgcgattagca 140  Q
    |||||| ||||    
T  23006895 tgcgatcagca 23006905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 29143382 - 29143297
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||| |||||| || |||||| ||||||    
T  29143382 ccaatttaagtttatgtttcaattacctttgaattagcaagactccacacgtaaggattaccgtgcgatcagtaggtgcggttagc 29143297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 13776856 - 13776774
Alignment:
Q  45 tgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    |||||||| ||| || ||||  |||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  13776856 tgcctttggaaatcttggaaagccaatttaagtttatgtttcaattacctttgaattaacaagaccccacacgtaaggatcac 13776774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 24090570 - 24090644
Alignment:
Q  77 tttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttag 151  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||| ||||| ||||    
T  24090570 tttatgtttcaattacctttgaattagcaagaccccacacataaggatcaccgtgcgatcagcatgtgcaattag 24090644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 25535772 - 25535654
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||| ||||||||||| | ||||   ||||  ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| || ||| | || |    
T  25535772 ttggcattcattgccttgggaaacactggaaacccaatttaagtttatgtctcaattacctttaaattagcaagaccccgcacgtacggttcaacgtgtg 25535673  T
Q  134 attagcaggtgcagttagc 152  Q
    || | ||||||||||||||    
T  25535672 atcaacaggtgcagttagc 25535654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 28605734 - 28605832
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    |||||| |||| |||| |||||| ||| || ||||| |||||||| || |||| |||||||||||||||||||||||| ||| ||| ||||||||||||    
T  28605734 aacatttgcctgcattacctttggaaatcttggaacgccaatttatgtctatggttcaattacctttgaattagcaaggccccgcatgtaaggatcacc 28605832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 22379110 - 22379242
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaat-ttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | ||||   ||||  ||||| | ||||||||||||||||||||||| ||||| |||||||  |||||||||||||||| ||     
T  22379110 ttggccttcattgccttgggaaacactggaaagccaatataaagtttatgtttcaattacctttcaattaacaagacctcgcacgtaaggatcaccgtgt 22379209  T
Q  133 gattagcaggtgcagttagctattggagagata 165  Q
    ||| | || ||||||||||| ||| ||| ||||    
T  22379210 gatcaacatgtgcagttagccattagagggata 22379242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 17198334 - 17198280
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaag 121  Q
    |||||||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  17198334 ccaatttaagtttatgtttcaattacctttgaattaacaagaccccgtacgtaag 17198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 32085861 - 32085797
Alignment:
Q  83 tttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcag 147  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||| |||||| |||| ||||||    
T  32085861 tttcaattatctttgaattagcaagacagtgcacgtaaggatcaccgtgcgatcagcaagtgcag 32085797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 28929176 - 28929058
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    |||| |||||||||||| | |||  | | ||| ||||||||| | ||| ||||||||||||||||||||  |||| || | |||||||||||||  ||||    
T  28929176 ttggacttcattgccttgggaaaaattgcaacgccaatttaaatctatatttcaattacctttgaattaataagatcccgtacgtaaggatcactgtgcg 28929077  T
Q  134 attagcaggtgcagttagc 152  Q
    || |||| |||||||||||    
T  28929076 atcagcatgtgcagttagc 28929058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 19199768 - 19199827
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    ||||||||||| |||||||||||||||||||| || ||||||||  ||||||| ||||||    
T  19199768 caatttaagttcatgtttcaattacctttgaactaacaagaccccacacgtaaagatcac 19199827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 17743146 - 17743231
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||  | || ||||||||  | |||||| | || |||||||||||    
T  17743146 ccaatttaattttatgtttcaactacctttgaattaacaagacctcgtacataaggatcgtcgtgcgatcatcaagtgcagttagc 17743231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 11390648 - 11390614
Alignment:
Q  113 gcacgtaaggatcaccatgcgattagcaggtgcag 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  11390648 gcacgtaaggatcaccgtgcgattagcaggtgcag 11390614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 11407309 - 11407275
Alignment:
Q  113 gcacgtaaggatcaccatgcgattagcaggtgcag 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  11407309 gcacgtaaggatcaccgtgcgattagcaggtgcag 11407275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 25939626 - 25939584
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccc 111  Q
    |||||||||||||||||||||||||||||| | || |||||||    
T  25939626 aatttaagtttatgtttcaattacctttgagtgagtaagaccc 25939584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 27418725 - 27418691
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacc 93  Q
    ||||||||| |||||||||||||||||||||||||    
T  27418725 taggaactctaatttaagtttatgtttcaattacc 27418691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 27419871 - 27419837
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacc 93  Q
    ||||||||| |||||||||||||||||||||||||    
T  27419871 taggaactctaatttaagtttatgtttcaattacc 27419837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 26291575 - 26291507
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    ||||||||| ||||||||||||||||| |||||||  | |  ||| |||||||  ||||||||||||||    
T  26291575 taggaactctaatttaagtttatgttttaattacccctaaggtagtaagaccccacacgtaaggatcac 26291507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 34488169 - 34488008
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||| |  |||| |||||||||||     
T  34488169 aacattggccttcattgtctttggaaatctaggaacaccaatttaagtttatgtatcaattacctttaaattagcaagatcacgcacataaggatcaccg 34488070  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    |||||| | || ||||| ||||| || |||| |||||||| |||||||||||||||||||||    
T  34488069 tgcgatcatcaagtgcaattagccatcggagggatagaccaagatcaaccgagatagtatag 34488008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 24265034 - 24265195
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| |||| ||||||  | ||||||||| ||||||||||||||| ||||||||| || |||||||||||||| ||||||     
T  24265034 aacattggccttcattgcctttggaaacataggaatgcaaatttaagtatatgtttcaattaccattgaattagaaaaaccctgcacgtaagaatcaccg 24265133  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    | | |  |||||||||||||||| ||  ||| |||||||  |||||||| ||||||||||||    
T  24265134 tccaagcagcaggtgcagttagccatcagagggatagacatagatcaactgagatagtatag 24265195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 24341665 - 24341826
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| |||| ||||||  | ||||||||| ||||||||||||||| ||||||||| || |||||||||||||| ||||||     
T  24341665 aacattggccttcattgcctttggaaacataggaatgcaaatttaagtatatgtttcaattaccattgaattagaaaaaccctgcacgtaagaatcaccg 24341764  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    | | |  |||||||||||||||| ||  ||| |||||||  |||||||| ||||||||||||    
T  24341765 tccaagcagcaggtgcagttagccatcagagggatagacatagatcaactgagatagtatag 24341826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 19008146 - 19008264
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||    |||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||    
T  19008146 ttggccttcattgccttgggaaacaccagaaagccaatttaagtttatgtttcaattatctttgaattagcaagaccccgcacgtaaggatcaccgtccg 19008245  T
Q  134 attagcaggtgcagttagc 152  Q
    || ||||||||||||||||    
T  19008246 atcagcaggtgcagttagc 19008264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 17314700 - 17314826
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||   ||||  ||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| | ||||    
T  17314700 ttggccttcattgccttgggaaacaccggaaagccaatttaagtttatgtctcaattacctttgaattaacaagaccccgcatgtaaggatcatcgtgcg 17314799  T
Q  134 attagcaggtgcagttagctattggag 160  Q
    || ||||||||||| |||| |||||||    
T  17314800 atcagcaggtgcagctagccattggag 17314826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 24659650 - 24659747
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| | |||||||||||||| || |||| ||||    
T  24659650 caatttaagcttatgtttcaattacctttgaattaacaagaccccgcacgtaaggatcaccgtgcgatcatcaggtgcagttagccatcggagggata 24659747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 24140948 - 24140827
Alignment:
Q  30 aacattggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||||||||||||||| | |||| |||| | |  |||||||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||    
T  24140948 aacattggccttcattgccttgggaaacactagaagc--caatttaagtttatctttcaattagctttgaattagcaagaccccacacgtaaggatcacc 24140851  T
Q  129 atgcgattagcaggtgcagttagc 152  Q
     || ||| ||||||||||||||||    
T  24140850 gtgtgatcagcaggtgcagttagc 24140827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 34129102 - 34128966
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaattt-aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | ||||   ||||  ||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||    
T  34129102 ttggccttcattgccttgggaaacactggaaagccaatatgaagtttatgtttcaattacctttgaattagcaagaccccgcacataaggatcaccgtgc 34129003  T
Q  133 gattagcaggtgcagttagctattggagagatagacc 169  Q
    ||  |||| ||||||||||| || |||| ||||||||    
T  34129002 gaccagcaagtgcagttagccatcggagggatagacc 34128966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 18207820 - 18207990
Alignment:
Q  21 acctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaa 120  Q
    ||||| || ||||||||||||||||||||||| ||| |||| ||  ||||||||||| ||||||||| ||||||||||||| | ||||||| ||| ||||    
T  18207820 accttcgggaacattggccttcattgcctttggaaatctagaaatgccaatttaagtctatgtttcagttacctttgaattcgtaagaccccgcatgtaa 18207919  T
Q  121 ggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    |||| ||| || ||| |||| | ||| ||||| |||| |  |||| ||| | |||||| ||||||||||||    
T  18207920 ggattaccgtgtgatcagcaagagcaattagccattgaatggatatacctaaatcaactgagatagtatag 18207990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 20563715 - 20563854
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||| | ||||   ||||  ||||||||||| ||||||| ||||||||||||||||| || ||||  |||||||||||||||     
T  20563715 aacattggccttcattgccttgggaaacactggaaagccaatttaagtctatgtttaaattacctttgaattaggaaaaccccacacgtaaggatcaccg 20563814  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacc 169  Q
    | |||| | |||||||||||||| || |||| || |||||    
T  20563815 tacgatcaacaggtgcagttagccatcggagggaaagacc 20563854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 20744234 - 20744369
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | |||    |||||  ||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||| ||||    
T  20744234 ttggccttcattgccttgggaaaaactggaacgtcaatttaagtttatgtttcaattacctttgaattaacaagaccccacacgtaacgatcaccgtgcg 20744333  T
Q  134 attagcaggtgcagttagctattggagagatagacc 169  Q
    || || ||||| ||||||| || |||| ||| ||||    
T  20744334 atcagaaggtgtagttagccatcggagggatggacc 20744369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 15375556 - 15375658
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||||||||| ||| ||||||| ||||  ||||||||||| |||||||||||||||| |||||| | |||||||||||||| || |||| |||||    
T  15375556 ccaatttaagtttatttttaaattaccattgatatagcaagaccccgcacgtaaggatcaccgtgcgatcatcaggtgcagttagccatcggagggatag 15375655  T
Q  167 acc 169  Q
    |||    
T  15375656 acc 15375658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 17432311 - 17432227
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| | |||||| | | ||||||||||||    
T  17432311 caatttaagtttatgcttcaattacctttgaattagcaagaccccgcacgtatggatcatcgtgcgatcaactggtgcagttagc 17432227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 20859149 - 20859057
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggag 160  Q
    ||||| |||||||||||||||||||||||||||||| ||||||   ||||||||||||||| |||||| || |||||||||||| ||| ||||    
T  20859149 caattaaagtttatgtttcaattacctttgaattagtaagaccagacacgtaaggatcaccgtgcgatcagtaggtgcagttagatatcggag 20859057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 24243635 - 24243692
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggat 124  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  24243635 ccaatttaagtttatatttcaattacctttgaattagcaagaccccgcacgtaaggat 24243692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 28665232 - 28665155
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttag 151  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || |||| ||| ||||||    
T  28665232 aagtttatgtttcaataacctttgaattagcaagaccctgcacgtagggatcaccgtgcaatcagcacgtgaagttag 28665155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 24266521 - 24266637
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||||| |||||||||  ||| |||||||   |||||||||| ||||||||||||||||||||  ||| ||||||||||| |||| ||||| |     
T  24266521 aacattggcctttattgccttttgaaatctaggaatgtcaatttaagtctatgtttcaattacctttgaggtagtaagaccctgcatgtaaagatcatcg 24266620  T
Q  130 tgcgattagcaggtgca 146  Q
    |||||| ||||| ||||    
T  24266621 tgcgatcagcagatgca 24266637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 24343152 - 24343268
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||||| |||||||||  ||| |||||||   |||||||||| ||||||||||||||||||||  ||| ||||||||||| |||| ||||| |     
T  24343152 aacattggcctttattgccttttgaaatctaggaatgtcaatttaagtctatgtttcaattacctttgaggtagtaagaccctgcatgtaaagatcatcg 24343251  T
Q  130 tgcgattagcaggtgca 146  Q
    |||||| ||||| ||||    
T  24343252 tgcgatcagcagatgca 24343268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 16523163 - 16523284
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagca---agaccctgcacgtaaggatcaccat 130  Q
    ||||||||||||||||| | |||    ||||  ||||||||||| |||||| ||||||||||||||||||||   |||||| ||| |||||||| ||| |    
T  16523163 ttggccttcattgccttgggaaatactggaaagccaatttaagtctatgttacaattacctttgaattagcaattagaccccgcatgtaaggataaccgt 16523262  T
Q  131 gcgattagcaggtgcagttagc 152  Q
    ||||| ||||||||||||||||    
T  16523263 gcgatcagcaggtgcagttagc 16523284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 20549307 - 20549425
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||| ||| | |||| |||| || ||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||||||  |||    
T  20549307 ttggccttcattgtcttgggaaacactagaaa-tccaatttaagtttatgtttcgattacccttgaattagcaagaccccacacgtaaggatcactgtgc 20549405  T
Q  133 gattagcaggtgcagttagc 152  Q
    ||| |  | |||||||||||    
T  20549406 gatcaataagtgcagttagc 20549425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 36175667 - 36175551
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||| ||||| ||| |||| |||  |||||||||| |||||||||||||  ||| |   || |||||||||||||||||||||||      
T  36175667 aacattggccttcattgtctttgaaaatctagaaacgtcaatttaagtctatgtttcaattattttttagagagtaagaccctgcacgtaaggatcacag 36175568  T
Q  130 tgcgattagcaggtgca 146  Q
    |||||| |||| |||||    
T  36175567 tgcgatcagcaagtgca 36175551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 18938242 - 18938189
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaa 120  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||| | |||||||    
T  18938242 ccaatttaagttcatgcttcaattacctttgaattaacaagaccttacacgtaa 18938189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 22871173 - 22871101
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatg 131  Q
    ||||||| |||| ||||||||||||||||||||||  |||   || |||||||  ||||||||||||||||||    
T  22871173 taggaacgccaacttaagtttatgtttcaattacccctgagggagtaagaccccacacgtaaggatcaccatg 22871101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 19051833 - 19051752
Alignment:
Q  67 ccaatttaagtttatg-tttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcag 147  Q
    |||||||||||||||| ||||||||||||| |||   | ||| |||  ||||||||||||||| |||||| |||| ||||||    
T  19051833 ccaatttaagtttatgctttcaattaccttagaaacggtaaggccccacacgtaaggatcaccgtgcgatcagcatgtgcag 19051752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 23336081 - 23335985
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatg-tttcaattacctttgaattagcaagaccctgcacgtaaggatca 126  Q
    |||||||||||||||| | |  | |||||| ||||| |||||||||||||||| ||||||||||||| |||  | |||||| |  |||||||||||||    
T  23336081 aacattggccttcattccttgggaaaacct-ggaacgccaatttaagtttatgctttcaattaccttagaaacaacaagacgccacacgtaaggatca 23335985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 17470873 - 17470937
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatg 131  Q
    |||| |||||||||||||||||||||| ||||   ||||| ||||  || |||||||||||||||    
T  17470873 ccaacttaagtttatgtttcaattacccttgagggagcaaaaccccacatgtaaggatcaccatg 17470937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 25401903 - 25401999
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatg-tttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||||||||||| |||||  | |||| |||||| ||| || |||| ||||||||||||||||  | | |||||||  |||||||||||||||    
T  25401903 ttggccttcattgccttggtaaatattggaaatccaatataatgtctatgctttcaattacctttgaggtggtaagaccccacacgtaaggatcacc 25401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 11177470 - 11177262
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| ||| |  ||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||      
T  11177470 aacattggccttcattgcctttggaaaacctggaatgccaatttaagtatatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcactg 11177371  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    ||||||   || ||||||||||| ||  ||| |||| ||| | ||||||||||||||||||| |||  || || ||||||| || ||||| |  ||||||    
T  11177370 tgcgatcgtcaagtgcagttagccatcagagggataaacctaaatcaaccgagatagtatagaccccacacgtaaggatcactgtgcgataagcaggtgc 11177271  T
Q  230 aacttgaca 238  Q
    |||||||||    
T  11177270 aacttgaca 11177262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 21688414 - 21688574
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||||||||| ||||||  ||  |||||||   ||||||||| |||||||||||||||||||||||||||||||  |||||||||| ||||||     
T  21688414 aacattggccttcatttcctttggcaatataggaacgataatttaagtctatgtttcaattacctttgaattagcaagacgatgcacgtaagcatcaccg 21688513  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtata 190  Q
    |||||| ||||||| ||| |||| || |||| |||||||| ||||||||||||||||||||    
T  21688514 tgcgatcagcaggtccagctagccatcggagggatagacctagatcaaccgagatagtata 21688574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 22568372 - 22568194
Alignment:
Q  33 attggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||| | |||    
T  22568372 attggccttcatttcctttggaaacctaggaataccaatttaagtttatgtttcaattacctttgaattataaagaccc-acacgtaaggatcatcgtgc 22568274  T
Q  133 gattagcaggtgcagttagctattggagagatagacc--cagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    ||| | || |||||||| || || |||||||||||||   |||||||  ||||||||||||  |||||| || |||||||    
T  22568273 gatcaacatgtgcagttggccatcggagagatagacctatagatcaattgagatagtatagaacctgcacgtaaggatca 22568194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 14072610 - 14072484
Alignment:
Q  43 attgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcagg 142  Q
    |||||||||| ||| || ||||| ||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||| || ||||||||||    
T  14072610 attgcctttggaaaacttggaacaccaatttaagtttatatttcaattacctttgaattaaaaagaccccgcacgtaaggatcaccgtgtgattagcagg 14072511  T
Q  143 tgcagttagctattggagagatagacc 169  Q
    ||||||||||  | |||| ||||||||    
T  14072510 tgcagttagccgtcggagggatagacc 14072484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 22412683 - 22412768
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  22412683 ccaatttaagtttatatttcaattacctttgaattagcaagaccctgcacgtaaggatcaccgtccgatcagcaggtgcagttagc 22412768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 27124171 - 27124268
Alignment:
Q  72 ttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||   |||||||||||    
T  27124171 ttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaagatcaccgtgcgatcagcaggtgcagttagccatcaaagagatagacc 27124268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 6630253 - 6630413
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| |||||||||||||||  || || |||||  ||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||       
T  6630253 aacattgtccttcattgcctttgggaatcttggaacgtcaatttaagtttatgtttcaattacctttaaattagcaagactccgcacataaggatcattg 6630352  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtata 190  Q
    |||||| |||||||||| ||||| ||| ||  |||| |||  |||||||||||||||||||    
T  6630353 tgcgatcagcaggtgcaattagccattagaaggatatacctggatcaaccgagatagtata 6630413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 15466901 - 15466721
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| |||||||| |||||| ||| |||||||| |||||||||||  ||||||||||||| ||||||||| |||||||| ||||||||||||| ||     
T  15466901 aacattgaccttcatttcctttggaaatctaggaacaccaatttaagtcaatgtttcaattacatttgaattaccaagaccccgcacgtaaggatcgccg 15466802  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    |||||| |||||||||| ||||  ||   || |||| ||  | ||||||||||||||||||| |||| || || |||||||    
T  15466801 tgcgatcagcaggtgcatttagacatcaaagggatatacttaaatcaaccgagatagtatagaccctacacgtaaggatca 15466721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 21907957 - 21907813
Alignment:
Q  45 tgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtg 144  Q
    |||| ||| ||| ||||||||  |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| | || |||    
T  21907957 tgccattggaaaactaggaacgtcaatttaagtctatgtttcaattacttttgaattagtaagaccctgcacgtaaggatcaccgtgcgatcatcatgtg 21907858  T
Q  145 cagttagctattggagagatagacccagatcaaccgagatagtat 189  Q
    || ||||| || |||  |||||||| ||||||| |||||||||||    
T  21907857 cacttagccatcggatggatagacctagatcaatcgagatagtat 21907813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 19245112 - 19244905
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||| ||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||| |||| ||||||||| |     
T  19245112 aacactggccttcattacctttgaaagcctaggaacgccaatttaagtttatgtttcaattacccttgaattggtaagaccccgcacataaggatcatcg 19245013  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    |||||| | || ||||||||||  ||  ||| |||| ||| ||||||||| || |||||||| ||| ||| ||  ||||||  | |||||||  ||||||    
T  19245012 tgcgatcaacatgtgcagttagtcatcagagggatatacctagatcaaccaagttagtatagaccccgcacgtagggatcaccgtgcgatcagcaggtgc 19244913  T
Q  230 aacttgac 237  Q
    | ||||||    
T  19244912 agcttgac 19244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 23008996 - 23009114
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | |||| |||| ||  |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||     
T  23008996 ttggccttcattgccttgggaaacactagaaag-ccaatttaagtttatgtttcaattacctttgaattagcgagaccttgcacgtaaggatcaccgtga 23009094  T
Q  133 gattagcaggtgcagttagc 152  Q
    ||| ||||| ||||||||||    
T  23009095 gatcagcagctgcagttagc 23009114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 23779368 - 23779250
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | |||| |||| ||  |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||     
T  23779368 ttggccttcattgccttgggaaacactagaaag-ccaatttaagtttatgtttcaattacctttgaattagcgagaccttgcacgtaaggatcaccgtga 23779270  T
Q  133 gattagcaggtgcagttagc 152  Q
    ||| ||||| ||||||||||    
T  23779269 gatcagcagctgcagttagc 23779250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 8245473 - 8245371
Alignment:
Q  19 agacctttggaaacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgt 118  Q
    |||||||  |||||||||| ||||||||||||   |||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||| ||||||    
T  8245473 agaccttcagaaacattggtcttcattgccttcagaaacctaggaacaccaatttaagtctatgtttcaattacttttgaataagcaagaccccgcacgt 8245374  T
Q  119 aag 121  Q
    |||    
T  8245373 aag 8245371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 11136369 - 11136292
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  11136369 aagtttatgtttcaattacctttgaatta-caagaccccgcacgtaaggatcaccgtgcgatcagcaggtgcagttagc 11136292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 20005546 - 20005627
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctat 155  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| || | |||||||||||||||||    
T  20005546 aagtttatgtttcaattacctttgaattagcaagaccccgcacgtaaggatcatcgtgcaatcaacaggtgcagttagctat 20005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 22813371 - 22813462
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||| |||||| ||||||||||||| || ||||||| ||||    
T  22813371 aagtttacgtttcaattacctttgaattaacaagaccccgcaggtaaggatcaccgtgcgatcagcaggtgcagttggccattggagggata 22813462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 9517216 - 9517114
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||   |||||| | |||||||||||||| || |||| |||||    
T  9517216 ccaatttaagtttatttttcaattacctgtgaattagaaagaccctgcgcgtaaggatcatggtgcgatcaacaggtgcagttagccatcggagggatag 9517117  T
Q  167 acc 169  Q
    |||    
T  9517116 acc 9517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 28933292 - 28933430
Alignment:
Q  101 tagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcat 200  Q
    ||||||||||| |||||||||||||||| |||||| | || ||||||||||| || |||| |||| ||| ||||||| ||||||||||||| |||  ||     
T  28933292 tagcaagaccccgcacgtaaggatcaccgtgcgatcaacaagtgcagttagccatcggagggataaacctagatcaatcgagatagtatagaccccacac 28933391  T
Q  201 gttaggatcagtgcgcgatcaataggtgcaacttgacac 239  Q
    || |||||||  | |||||||| ||||||| ||||||||    
T  28933392 gtaaggatcaccgtgcgatcaacaggtgcagcttgacac 28933430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 17382461 - 17382383
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||| | |||||| |||||||    
T  17382461 aagtttatgtttcaattacctttgaattagcaagaccccgcacgtatggatcgccgtgcgatcaacaggtgtagttagc 17382383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 20144702 - 20144804
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| ||| || ||| ||| || ||||| || |||| |||||    
T  20144702 ccaatttaattttatgtttcaattacctttgaaataacaagaccccgcacgtaaggatcaccgtgccatcagccggtccaattagccatcggagcgatag 20144801  T
Q  167 acc 169  Q
    |||    
T  20144802 acc 20144804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 22188137 - 22188035
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| ||| || ||| ||| || ||||| || |||| |||||    
T  22188137 ccaatttaattttatgtttcaattacctttgaaataacaagaccccgcacgtaaggatcaccgtgccatcagccggtccaattagccatcggagcgatag 22188038  T
Q  167 acc 169  Q
    |||    
T  22188037 acc 22188035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 4340271 - 4340062
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||| ||||||||| ||||| |||  ||||||  ||||| ||| || ||||||||||||||||||||  ||| ||||||||   |||||| ||||||    
T  4340271 aacattgaccttcattgtctttggaaatttaggaatgccaatataaagtctatgtttcaattacctttgaggtagtaagaccctatgcgtaagaatcacc 4340172  T
Q  129 atgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtg 228  Q
     || ||  ||||||||||   |   ||||||| |||||||| | ||||||||||||||||||| ||| ||| || || |||| || || ||||| || ||    
T  4340171 gtgtgaccagcaggtgcaaccaaacattggagggatagaccgaaatcaaccgagatagtatagaccccgcacgtaagaatcattgtgcaatcaacagatg 4340072  T
Q  229 caacttgaca 238  Q
    || |||||||    
T  4340071 cagcttgaca 4340062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 17823372 - 17823418
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctg 113  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||    
T  17823372 ccaatttaagtttatgtttcaattacctttgaattactaagaccctg 17823418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 8241696 - 8241627
Alignment:
Q  141 ggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    |||||||||||| ||||||| |||| ||| ||||||||||||||||||||| || |||| || |||||||    
T  8241696 ggtgcagttagccattggagggatatacctagatcaaccgagatagtatagaccttgcacgtaaggatca 8241627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 14722429 - 14722362
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgat 135  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||  |  |||||||||||| ||||||    
T  14722429 caatttgagtttatgtttcaattacctttgaattaacaagatccctcgagtaaggatcaccgtgcgat 14722362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 14725928 - 14725882
Alignment:
Q  47 cctttgtaaacctaggaactccaatttaagtttatgtttcaattacc 93  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||    
T  14725928 cctttggaaatctaggaactctaatttaagtttatgtttcaattacc 14725882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 1635496 - 1635339
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatg-tttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | ||| || ||||  ||||||||||| | || ||||||||||||||||    | || ||||| || |||||||||||| ||     
T  1635496 ttggccttcattgccttgggaaatcttggaaagccaatttaagtatttgctttcaattacctttgagacggtaataccctacatgtaaggatcaccgtgt 1635397  T
Q  133 gattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    ||| |||||||||| | ||   | |||| |||||||| || ||||| ||||||||||||    
T  1635396 gatcagcaggtgcaatcagacttaggagggatagacctag-tcaactgagatagtatag 1635339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 9726510 - 9726476
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacc 93  Q
    ||||||||| |||||||||||||||||||||||||    
T  9726510 taggaactctaatttaagtttatgtttcaattacc 9726476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 14638014 - 14637973
Alignment:
Q  105 aagaccctgcacgtaaggatcaccatgcgattagcaggtgca 146  Q
    ||||||| |||||||||||||||| |||||| ||||||||||    
T  14638014 aagaccccgcacgtaaggatcaccgtgcgatcagcaggtgca 14637973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 5625170 - 5625076
Alignment:
Q  34 ttggccttcattgcctt-tgtaaacctaggaactccaatttaagtttatg-tttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    |||| |||||||||||| || |||||| ||||| |||||||||||||||| |||||||||||||  || | | |||||||  |||||||||||||||    
T  5625170 ttggtcttcattgccttgtgaaaacct-ggaacaccaatttaagtttatgttttcaattaccttataaatggtaagaccc-acacgtaaggatcacc 5625076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 17826806 - 17826850
Alignment:
Q  108 accctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||| |||| ||| | ||||||||||||||    
T  17826806 accctgcacgtaaggatcatcatgggatcaacaggtgcagttagc 17826850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 22568210 - 22568174
Alignment:
Q  110 cctgcacgtaaggatcaccatgcgattagcaggtgca 146  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  22568210 cctgcacgtaaggatcaccatacgattagcatgtgca 22568174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 167861 - 168069
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||||| ||||| |||||| ||| || ||||| |||||| |||| ||||||| ||||||||||||||||||||||||| |||  ||||||||| |     
T  167861 aacattggccctcattccctttggaaatcttggaacgccaattcaagtctatgttttaattacctttgaattagcaagaccccgcatataaggatcatcg 167960  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    |||||| || ||||||||||||| || |||| |||| ||| ||||||||||||||||||||| |||  || ||  ||||||  | |||||||| ||||||    
T  167961 tgcgatcagtaggtgcagttagccatcggagggatatacctagatcaaccgagatagtatagaccccacacgtatggatcaccgtgcgatcaacaggtgc 168060  T
Q  230 aacttgaca 238  Q
    | |||||||    
T  168061 agcttgaca 168069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 7984105 - 7983926
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||      
T  7984105 aacatcggccttcatttcctttggaaacctaggaacgccaatttaagtttatgtttcaatcacctttgaattagcaagacccgacacgtaaggatcactg 7984006  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    |||||| |  ||||||||||||  || |||| |||| ||| || |||||||| ||| ||||| ||| ||| || |||||||    
T  7984005 tgcgatca-taggtgcagttagacatcggagggataaaccaagttcaaccgatataatatagaccccgcacgtaaggatca 7983926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 24113916 - 24114038
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| ||||||||||||| | |||  | ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||    
T  24113916 aacattgaccttcattgccttgggaaaaattggaacgccaatttaagtttatgtttcaattacctttgaattaacaagaccccgcatgtaagaatcacca 24114015  T
Q  130 tgcgattagcaggtgcagttagc 152  Q
    |||||| |||||||| |||||||    
T  24114016 tgcgatcagcaggtgtagttagc 24114038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 17509698 - 17509567
Alignment:
Q  38 ccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatta 137  Q
    ||||||||||||| | ||||   ||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| || |    
T  17509698 ccttcattgccttgggaaacactggaaagccaatttaagtttatgtttcaattacctttgaattaacaagaccctgcatgtaaggatcaccgtgcaatca 17509599  T
Q  138 gcaggtgcagttagctattggagagatagacc 169  Q
    ||||||||||||||| || | || ||||||||    
T  17509598 gcaggtgcagttagccatcgtagggatagacc 17509567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 18448177 - 18448293
Alignment:
Q  34 ttggccttcattgcctttgtaaac-ctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    ||||||||||||||||| | |||| |||| || || ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |||    
T  18448177 ttggccttcattgccttaggaaacactagaaagtc-aatttaagtttatgtttcacttgcctttgaattagcaagaccccgcacgtaaggatcaccgtgc 18448275  T
Q  133 gattagcaggtgcagtta 150  Q
    ||| ||||||||||||||    
T  18448276 gatcagcaggtgcagtta 18448293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 17101574 - 17101659
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||| ||||||||||    
T  17101574 ccaatttaagtttatgtttcaattatctttgaattagcaagaccccgcacgtaaggatcactgtgcgatcagcagatgcagttagc 17101659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 25226564 - 25226467
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  || ||| |||||||| | |||||||| |||| ||||    
T  25226564 caatttaagtttatgtttcaattaccttttaattagcaagaccccgcacgtaaggatcactgtgtgatcagcaggtgaaattagctatcggagggata 25226467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 17996988 - 17996920
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  17996988 ccaatttaagtttatgtttcaattacctttgaattagcaagaccccgcacgtaaggattaccgtgcgat 17996920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 19787232 - 19787108
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||||| |||||||||||||||||||||||  ||||| || ||| |||||||||||| ||| || |||| || |||||||| || |||| ||||     
T  19787232 ccaatttaagtctatgtttcaattacctttgaattgacaagatcccgcatgtaaggatcaccgtgcaatcagcatgtacagttagccatcggagggataa 19787133  T
Q  167 acccagatcaaccgagatagtatag 191  Q
    ||| |||||||| ||||||||||||    
T  19787132 acctagatcaactgagatagtatag 19787108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 24110333 - 24110437
Alignment:
Q  61 ggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggag 160  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||| || ||||||| |||| || |||| |||||||||||||| ||||    
T  24110333 ggaacgccaatttaagtttatgtttcaattacctttaaattagcaagaccccacacatatggatcactatgcaatcagcatgtgcagttagctataggag 24110432  T
Q  161 agata 165  Q
     ||||    
T  24110433 ggata 24110437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 24723266 - 24723357
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||| |||||||| ||||||| || |||| ||||    
T  24723266 aagtttatgtttcaattacctttgaattagcaagaccccagacgtaaggatcaccgtgcgatcagcaggtgtagttagccatcggagggata 24723357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 14528613 - 14528514
Alignment:
Q  92 cctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtatag 191  Q
    |||||||||||||||||||| |||| |||||||||   |||||| |||||||||||||| | ||  ||| |||||||| |||||||||||||||||||||    
T  14528613 cctttgaattagcaagaccccgcacttaaggatcaatgtgcgatcagcaggtgcagttatccatcagagggatagacctagatcaaccgagatagtatag 14528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 19264501 - 19264423
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||| |||||| | ||||||||||||||    
T  19264501 aagtttatgtttcaattacctttgaattaacaaaaccccgcacgtaagaatcaccgtgcgatcatcaggtgcagttagc 19264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 24270027 - 24269969
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatc 125  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  24270027 ccaatttaagtttatatttcaattacctttgaattagcaagaccccacacgtaaggatc 24269969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 25182025 - 25182203
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||| ||||| |||    |||||  | |||| ||| ||||||| |||||||||||||||| |||||||   ||| ||| ||||| |     
T  25182025 aacattggccttcattgtctttggaaaatctggaacaactattttagtctatgtttaaattacctttgaattaacaagacctcacacataaagatcatct 25182124  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggat 208  Q
    |||||| ||| ||||| |||||| ||   || |||||||| ||||||||||||||||||||| ||| ||| || |||||    
T  25182125 tgcgatcagctggtgctgttagccatcaaagtgatagacctagatcaaccgagatagtatagaccccgcacgtaaggat 25182203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 26832001 - 26832050
Alignment:
Q  76 gtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatc 125  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  26832001 gtttatgtttcaattacctttgaattagcaagacgccgcacgtaaggatc 26832050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 23892842 - 23892894
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatca 126  Q
    |||||| |||||||||||||||||||||||||||| || ||| ||||||||||    
T  23892842 aagtttctgtttcaattacctttgaattagcaagatcccgcatgtaaggatca 23892894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 6885458 - 6885372
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacg-taaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||| ||| ||||||||||||||||||| ||||| ||  |||| ||| ||||| | || || |||||||||||||||||    
T  6885458 ccaatttaagttcatgcttcaattacctttgaattaacaagagcccacacgttaaagatcatcgtgtgactagcaggtgcagttagc 6885372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 28276395 - 28276456
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    |||||||||||| ||| ||||||||||||||||||  ||||||||  ||||||| |||||||    
T  28276395 ccaatttaagttcatgcttcaattacctttgaatttacaagaccccacacgtaaagatcacc 28276456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 30121746 - 30121813
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatca 126  Q
    ||||||| ||||||||||| |||||||||| |||| ||||   || |||||||| |||||||||||||    
T  30121746 taggaacgccaatttaagtctatgtttcaactaccattgagagagtaagaccctacacgtaaggatca 30121813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 37528352 - 37528442
Alignment:
Q  61 ggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||| ||||||||||||| || | || |||||||||||||| ||||| |  |||||||| ||||| | |||||| | ||||||||||||||    
T  37528352 ggaacaccaatttaagtttgtggt-cagttacctttgaattaacaagatctcgcacgtaaagatcatcgtgcgatcaacaggtgcagttagc 37528442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 17977112 - 17977078
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaattacc 93  Q
    |||||| ||||||||||||||||||||||||||||    
T  17977112 taggaaatccaatttaagtttatgtttcaattacc 17977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 17156325 - 17156166
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||||||||||||||||||| ||| | |||||| ||||| ||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||||     
T  17156325 aacattggccttcattgcctttggaaatcgaggaacgccaatgtaagtctatctttcaattacctttgaattaggaagaccccgcatgtaaggatcacct 17156226  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtata 190  Q
    |||||| | || ||| | ||||| || |||| |||||||| ||||||||||||||||||||    
T  17156225 tgcgatcaacaagtgtatttagccatcggag-gatagacctagatcaaccgagatagtata 17156166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 12411610 - 12411495
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | |||    ||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | |||    
T  12411610 ttggccttcattgccttggaaaaaactggaaagccaaattaagtttatgtttcaattacctttgaattagcaagacctcgcacgtaaggatcactacgcg 12411511  T
Q  134 attagcaggtgcagtt 149  Q
    || |||||||||||||    
T  12411510 atcagcaggtgcagtt 12411495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 4650695 - 4650617
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||    
T  4650695 aagtttatgtttcaattacctttgaattaccaagaccccgcacgtaaggatcaccgtgcgatcaacaggtgcagttagc 4650617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 2723407 - 2723587
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    ||||||| | ||||||||||||| ||| |||||||  ||||||||||| ||||||||||||||||||||||| | ||||| |  ||||||| |||||||     
T  2723407 aacattgactttcattgcctttggaaatctaggaatgccaatttaagtctatgtttcaattacctttgaattggtaagacgccacacgtaacgatcaccg 2723506  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatca 210  Q
    |||||| | || ||  ||||||  | ||||| |||| ||  | ||||||||||||||||||| ||| ||| || |||||||    
T  2723507 tgcgatcaacatgtatagttagacaatggagggataaacatatatcaaccgagatagtatagaccccgcacgtaaggatca 2723587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 19167904 - 19167789
Alignment:
Q  37 gccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgatt 136  Q
    |||||||||||||| | ||||   ||||  ||||||||||||||||||| | ||||||||||||||||||||||   ||||||||||||||| ||||||     
T  19167904 gccttcattgccttgggaaacactggaaagccaatttaagtttatgttttagttacctttgaattagcaagaccacacacgtaaggatcaccgtgcgatc 19167805  T
Q  137 agcaggtgcagttagc 152  Q
    | ||||||||||||||    
T  19167804 aacaggtgcagttagc 19167789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 19908809 - 19908707
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatag 166  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||| |||| ||| || ||||||||||||| || |||  |||||    
T  19908809 ccaatttaagtttatctttcaattacctttgaattacaaagaccccgcacgtaaggatcatcatgtgatcagtaggtgcagttagcaatcggaaggatag 19908710  T
Q  167 acc 169  Q
    |||    
T  19908709 acc 19908707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 8170358 - 8170276
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcac 116  Q
    ||||||||||||||||| ||||||   ||||  | ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8170358 ttggccttcattgccttggtaaacactggaaagcaaatttaagtttatgtttcaattacctttgaattagcaagaccccgcac 8170276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 8267340 - 8267267
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcag 147  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||| |||||||    
T  8267340 aagtctatgtttcaattacctttgaattagcaagatcctgcacgtaaagatcaccttgcgatcagcgggtgcag 8267267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 20023174 - 20023235
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||    
T  20023174 ccaatttaagtttatgtttcaattacctttgaattagcaagaccccgcacataagaatcacc 20023235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 8319455 - 8319395
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcga 134  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  8319455 aagtctatgtttcaattacctttgaattagcaagatcctgcacgtaaggatcaccgtgcga 8319395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 16229609 - 16229686
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccc 111  Q
    |||||||||||| |||| | ||||   ||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  16229609 ttggccttcatttccttgggaaacactggaaagccaatttaaatttatgtttcaattacctttgaattagcaagaccc 16229686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 8144148 - 8143943
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||| |||| ||||||||| ||| |||  |||||| |||||||||||| ||||||||||||||||||||   || ||||||   ||||||||||||||      
T  8144148 aacactggctttcattgcccttggaaatttaggaattccaatttaagtctatgtttcaattacctttgagagagtaagacctcacacgtaaggatcactg 8144049  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtgc 229  Q
    || || ||| ||||| |  |    ||||||| |||||||| | |||||| |||| |||| |||||| |||||| | |||||  | |||||||| | ||||    
T  8144048 tgtgactagtaggtgaaactcaacattggagggatagacctaaatcaactgagaaagta-aggccccgcatgtaaagatcatcgtgcgatcaacatgtgc 8143950  T
Q  230 aacttga 236  Q
    |||||||    
T  8143949 aacttga 8143943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 8882761 - 8882839
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||| ||||||||||| ||| |||||||| | ||||||||||||||   |||||| || |||||||||||||    
T  8882761 aagtttatgttacaattacctttaaataagcaagacgccgcacgtaaggatcattgtgcgatcagtaggtgcagttagc 8882839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 3116018 - 3116103
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||  ||||||| ||||| | || ||  | ||||||||||||||    
T  3116018 ccaatttaagttcatgcttcaattacctttgaattaacaagaccccacacgtaaagatcatcgtgtgaccaccaggtgcagttagc 3116103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 21325876 - 21325667
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacc 128  Q
    |||||||| |||||||||||||| |||  ||||||  ||||| ||| || ||||||||||||||||||||  | | |||||||   | |||| |||| |     
T  21325876 aacattggtcttcattgcctttgaaaatttaggaatgccaatataaagtctatgtttcaattacctttgaggtggtaagaccccataggtaacgatcgcg 21325777  T
Q  129 atgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatcagtgcgcgatcaataggtg 228  Q
     || ||  | ||||||||   |  |||||||| |||||||| | ||||||||||||||||||| ||| ||| || ||||||| || | |||||| | |||    
T  21325776 gtgtgaccaacaggtgcaaccaaatattggagggatagaccgaaatcaaccgagatagtatagaccccgcacgtaaggatcactgtgtgatcaacatgtg 21325677  T
Q  229 caacttgaca 238  Q
    ||||||||||    
T  21325676 caacttgaca 21325667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 21302450 - 21302340
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatg-tttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    |||||||||| |||||| | ||| || ||||  ||||||||||| |||| ||||||||||||| ||  | | |||||||  ||||||||||||||| ||     
T  21302450 ttggccttcactgccttggaaaatcttggaaagccaatttaagtctatgctttcaattaccttagagatggtaagaccccacacgtaaggatcaccgtgt 21302351  T
Q  133 gattagcaggt 143  Q
    |||||||||||    
T  21302350 gattagcaggt 21302340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 19575861 - 19575898
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaa 106  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19575861 aatttaattttatgtttcaattacctttgaattagcaa 19575898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 8765537 - 8765481
Alignment:
Q  113 gcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagatagacc 169  Q
    |||||||||||||||| |||||| |||| ||||||||||| || |||| ||||||||    
T  8765537 gcacgtaaggatcaccgtgcgatcagcaagtgcagttagccatcggagggatagacc 8765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 8446318 - 8446259
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatca 126  Q
    ||||||||||| ||||||||||||||||||||   || |||||||  |||||||||||||    
T  8446318 ccaatttaagtctatgtttcaattacctttgagggagtaagaccccacacgtaaggatca 8446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 13907851 - 13907882
Alignment:
Q  59 taggaactccaatttaagtttatgtttcaatt 90  Q
    ||||||||||||||||||||||||||||||||    
T  13907851 taggaactccaatttaagtttatgtttcaatt 13907882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 934434 - 934373
Alignment:
Q  104 caagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    |||||||| ||| |||||||||||| |||||| |||| ||||||||||| || |||| ||||    
T  934434 caagaccccgcaagtaaggatcaccgtgcgatcagcatgtgcagttagccatcggagggata 934373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 18736244 - 18736305
Alignment:
Q  37 gccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttga 98  Q
    |||||| || |||||| |||  ||| || |||||||||||||||||||| ||||||||||||    
T  18736244 gccttcgttacctttgaaaatttagaaaatccaatttaagtttatgtttgaattacctttga 18736305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 27413563 - 27413604
Alignment:
Q  111 ctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||||||||||| || ||| ||||||||||||||||    
T  27413563 ctgcacgtaaggatcaccgtgtgatcagcaggtgcagttagc 27413604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 42790 - 42968
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||| ||||||||||| |||||| ||| || ||||  ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||     
T  42790 aacactggccttcatttcctttgaaaatcttggaatgccaatttaagtctatgtttcaattacctttgaattagcaagaccccacacgtaaggatcaccg 42889  T
Q  130 tgcgattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctgcatgttaggatc 209  Q
    |||||| | |||||||| ||||| ||  |  ||||| | | ||||||||||||||| ||||| ||| ||| || ||||||    
T  42890 tgcgatcatcaggtgcaattagccatcag-tagataaatcgagatcaaccgagataatatagaccccgcacgtaaggatc 42968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 941 - 823
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    |||||||||||||| || | |||| |  |||  ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | ||||    
T  941 ttggccttcattgcattgggaaacattagaaagccaatttaagtttatgtttcaattacctttgaactagcaagaccccgcacgtaaggatcatcgtgcg 842  T
Q  134 attagcaggtgcagttagc 152  Q
    || ||||||||||||||||    
T  841 atcagcaggtgcagttagc 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 57 - 153
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||| || |||| ||||    
T  57 aatttaagtttatgtttcaattacgtttgaattagaaagaccttgcacgtaaggatcaccatgcgatgagcaggtgcatttagccatcggagggata 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 40120 - 39998
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcacca 129  Q
    |||||||  |||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||| |||| ||||||||| |||| ||||||||| |     
T  40120 aacattgatcttcattgccttcggaaacctaggaacgccaatttaagtttatgtgtcaattacatttcaatttgcaagaccccgcacataaggatcatcg 40021  T
Q  130 tgcgattagcaggtgcagttagc 152  Q
    |||||| ||||||| ||||||||    
T  40020 tgcgatcagcaggtacagttagc 39998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 76883 - 76798
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||    
T  76883 ccaatttaagtctatgtttcaattacttttgaattagcaagaccccgtacgtaaggatcaccgtgcgatcagcaggtgcagttagc 76798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 55393 - 55229
Alignment:
Q  33 attggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgc 132  Q
    |||||||||||||||||||| ||| || ||| | ||||||| ||| ||| ||||||||||||||||||||||||||||| ||| ||| ||||||   |||    
T  55393 attggccttcattgcctttggaaatcttggatcgccaattttagtctatatttcaattacctttgaattagcaagaccccgcatgtacggatcattgtgc 55294  T
Q  133 gattagcaggtgcagttagctattggagagatagacccagatcaaccgagatagtataggccctg 197  Q
    ||| || ||||||||||||| || | |  |||||||| | |||||| |||||| ||||| |||||    
T  55293 gatcagaaggtgcagttagccatcgaaaggatagacctaaatcaactgagataatatagaccctg 55229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 70370 - 70239
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcg 133  Q
    ||||||||||||||||| | ||||   ||||  |||||||||||||| | ||||||| | |||||||||||||||||| |||| |||||||||| |||||    
T  70370 ttggccttcattgccttaggaaacactggaaagccaatttaagtttacgcttcaattgcatttgaattagcaagaccccgcacataaggatcactatgcg 70271  T
Q  134 attagcaggtgcagttagctattggagagata 165  Q
    || |||||||||| ||||| ||||||| ||||    
T  70270 atcagcaggtgcacttagccattggagggata 70239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 21734 - 21660
Alignment:
Q  74 aagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagt 148  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||    
T  21734 aagtttatgtttcaattacctttgaattagcaagaccctgtacgtaaggatcatcgtgcgatcagcaggtgcagt 21660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 103825 - 103923
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||| ||| ||||||| || |||| ||||    
T  103825 ccaatttaagtttatatttcaattacctttgaattagcacgaccccgcatgcaaggatcaccgtgcgattagcaagtgtagttagccatcggagggata 103923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 16058 - 15980
Alignment:
Q  87 aattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagctattggagagata 165  Q
    |||||||||||||||||||| |||||||||||||||| |||| |||||| | || ||||||||||| || |||| ||||    
T  16058 aattacctttgaattagcaaaaccctgcacgtaaggaccaccgtgcgatcaacatgtgcagttagccatcggagggata 15980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 17381 - 17415
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaatta 102  Q
    |||||||||| ||||||||||||||||||||||||    
T  17381 caatttaagtctatgtttcaattacctttgaatta 17415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 51292 - 51208
Alignment:
Q  68 caatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatgcgattagcaggtgcagttagc 152  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||  ||| ||||||||||| |||||| | || ||||| |||||    
T  51292 caatttaagtatatgtttcaattaactttgaattaacaagaccccacacataaggatcaccgtgcgatcaacaagtgcaattagc 51208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 72529 - 72469
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    ||||||||| ||||||||||||||||||||||| || |||||||| ||||||||| |||||    
T  72529 ccaatttaattttatgtttcaattacctttgaaataacaagaccccgcacgtaagaatcac 72469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 26312 - 26252
Alignment:
Q  67 ccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    |||||||||||||||||||||||||||||| ||||| |||||||  |||| ||||||||||    
T  26312 ccaatttaagtttatgtttcaattacctttaaattaacaagacctcgcacataaggatcac 26252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 96424 - 96490
Alignment:
Q  61 ggaactccaatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcac 127  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| |||||||| |||  ||||||||||    
T  96424 ggaacgccaatttaagtctatatttcaattacctttgaattaacaagaccccgcatataaggatcac 96490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 27572 - 27628
Alignment:
Q  34 ttggccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaatt 90  Q
    ||||||||||||||||| | |||| | ||||| ||||||||||||||||||||||||    
T  27572 ttggccttcattgccttgggaaacattggaacgccaatttaagtttatgtttcaatt 27628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 198 - 260
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagaccctgcacgtaaggatcaccatg 131  Q
    |||||| ||||||||||||||||||  ||| | || |||||||| ||||||||||||||||||    
T  198 aatttatgtttatgtttcaattaccactgagtgagtaagaccctacacgtaaggatcaccatg 260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 89425 - 89486
Alignment:
Q  37 gccttcattgcctttgtaaacctaggaactccaatttaagtttatgtttcaattacctttga 98  Q
    ||||||||| |||||| |||  ||| || |||||||||||||||||||| ||||||||||||    
T  89425 gccttcattacctttgaaaatttagaaaatccaatttaagtttatgtttgaattacctttga 89486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 1225 - 1294
Alignment:
Q  30 aacattggccttcattgcctttgtaaacctaggaactccaatttaa-gtttatgtttcaattacctttga 98  Q
    |||||||||||| |||||||||| |||  ||||||  ||||| ||| || ||||||||||||||||||||    
T  1225 aacattggccttaattgcctttggaaatttaggaatgccaatataaagtctatgtttcaattacctttga 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 163698 - 163739
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagacc 110  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  163698 aatttaagttcatgcttcaattacctttgaattaacaagacc 163739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 181305 - 181346
Alignment:
Q  69 aatttaagtttatgtttcaattacctttgaattagcaagacc 110  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  181305 aatttaagttcatgcttcaattacctttgaattaacaagacc 181346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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