View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5200_high_7 (Length: 336)
Name: NF5200_high_7
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5200_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 335
Target Start/End: Original strand, 36147195 - 36147507
Alignment:
| Q |
23 |
cacaattacatatttacttactacatttgttccttcttttcacttcataccccaccacttcccatttccactccttcacacatcccattaaccatcacca |
122 |
Q |
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| T |
36147195 |
cacaattacatatttact-actacatttgttccttcttttcacttcataccccaccact-cccatttccactccttcacacatcc-attaaccatcacca |
36147291 |
T |
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| Q |
123 |
ccaagaaacatcacccacgattctctctcaacaatgacaaagccaaaatctaccaacgaagataacagcaccaccaccaccaacaacaacaacatgagtc |
222 |
Q |
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| T |
36147292 |
ccaagaaacatcacccacgattctctctcaacaatgacaaagccaaaatctaccaacgaagataacagcaccaccaccaccaacaacaacaacatgagtc |
36147391 |
T |
|
| Q |
223 |
ttctcttagtattattcccacaagacaaatcatccaccacaacaacaactaaactaaattcaccttcctcttcctcttctttctcaccatca---tcatc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
36147392 |
ttctcttagtattattcccacaagacaaatcatccaccacaacaacaactaaactaaattcaccttcctcttcctcttctttctcaccatcatcttcttc |
36147491 |
T |
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| Q |
320 |
ttcaaaatctctcatt |
335 |
Q |
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|||||||||||||||| |
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| T |
36147492 |
ttcaaaatctctcatt |
36147507 |
T |
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