View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5200_high_8 (Length: 328)
Name: NF5200_high_8
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5200_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 46380644 - 46380329
Alignment:
| Q |
1 |
aatagactgcgtgggaaaacaacaaataaaagacaagttcactgaatgcacaaaagggcctcactattttgtagcaaatcaatacataatccaatccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46380644 |
aatagactgcgtgggaaaacaacaaataaaagacaagttcacggaatgcacaaaagggcctcactattttgtagcaaatcaatacataatccaatccctc |
46380545 |
T |
|
| Q |
101 |
ttttacacaaaccaataactcgagaaaattgcacatgcttcctagttgctccttggagcaaaatgacaacaaaactgtacagtgtgctatacaggtgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46380544 |
ttttacacaaaccaataactcgagaaaattgcacatgcttcctagttgctccttggagcaaaatgacaacaaaactgtacagtgtgctatacaggtgaat |
46380445 |
T |
|
| Q |
201 |
tacaggtataagcttgggtgtatgttccattttatgtaaaaacatcataacttgtttgctacaaaggttgatcctgctttccgctgaagtcagacgtgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46380444 |
tacaggtataagcttgggtgtatgttccattttatgtaaaaacatcataacttgtttgctacaaaggttgatcctgctttccgctgaagtcagacgtgga |
46380345 |
T |
|
| Q |
301 |
tgacgggggaggtctg |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
46380344 |
tgacgggggaggtctg |
46380329 |
T |
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