View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5200_high_9 (Length: 327)
Name: NF5200_high_9
Description: NF5200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5200_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 69 - 311
Target Start/End: Original strand, 36341330 - 36341572
Alignment:
| Q |
69 |
tcaaaggaatatgatttttacttttaagttttaaccttgaccatttacataaaagtggtcctagcagttgcataaaattagttagttagctggatataca |
168 |
Q |
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| T |
36341330 |
tcaaaggaatatgatttttacttttaagttttaaccttgaccatttacataaaagtggtcctagcagttgcataaaattagttagttagctggatataca |
36341429 |
T |
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| Q |
169 |
tattccttagatcacatgacattgaaaaccatgtgtaattgcatcattaatggttctattactaagatgatatatatacgcactcaataatagagaacat |
268 |
Q |
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| T |
36341430 |
tattccttagatcacatgacattgaaaaccatgtgtaattgcatcattaatggttctattactaagatgatatatatacgcactcaataatagagaacat |
36341529 |
T |
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| Q |
269 |
aagaatttctcattgaaaggttgcgtatatatacatatatgct |
311 |
Q |
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| T |
36341530 |
aagaatttctcattgaaaggttgcatatatatacatatatgct |
36341572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 36339435 - 36339510
Alignment:
| Q |
2 |
atggagttggtaaagattttgatttctacttacatctcccttccctgtagttagttatacaatataatcaaaggaa |
77 |
Q |
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| T |
36339435 |
atggagttggtaaagattttgatttctacttacatctcccttccctgtagttagttatacaatataatcaaaggaa |
36339510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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