View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5201-Insertion-10 (Length: 38)

Name: NF5201-Insertion-10
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5201-Insertion-10
NF5201-Insertion-10
[»] chr2 (4 HSPs)
chr2 (6-38)||(42269229-42269261)
chr2 (6-38)||(42281000-42281032)
chr2 (6-36)||(42260168-42260198)
chr2 (6-38)||(42254640-42254672)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-36)||(489003-489033)


Alignment Details
Target: chr2 (Bit Score: 33; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 42269229 - 42269261
Alignment:
Q  6 caagagggacctaatacaagaaacaaaaatggt 38  Q
    |||||||||||||||||||||||||||||||||    
T  42269229 caagagggacctaatacaagaaacaaaaatggt 42269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 42281000 - 42281032
Alignment:
Q  6 caagagggacctaatacaagaaacaaaaatggt 38  Q
    |||||||||||||||||||||||||||||||||    
T  42281000 caagagggacctaatacaagaaacaaaaatggt 42281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 42260168 - 42260198
Alignment:
Q  6 caagagggacctaatacaagaaacaaaaatg 36  Q
    |||||||||||||||||||||||||||||||    
T  42260168 caagagggacctaatacaagaaacaaaaatg 42260198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 42254640 - 42254672
Alignment:
Q  6 caagagggacctaatacaagaaacaaaaatggt 38  Q
    ||||||||||||||||||||| |||||||||||    
T  42254640 caagagggacctaatacaagagacaaaaatggt 42254672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 489003 - 489033
Alignment:
Q  6 caagagggacctaatacaagaaacaaaaatg 36  Q
    |||||||||||||||||||||||||||||||    
T  489003 caagagggacctaatacaagaaacaaaaatg 489033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University