View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201-Insertion-2 (Length: 555)
Name: NF5201-Insertion-2
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 104 - 555
Target Start/End: Complemental strand, 2185749 - 2185298
Alignment:
| Q |
104 |
tattaaataaaaattataccaaaggaaaagcataagtctagatgttctggtaggtagtgtcatgcatttaactagaaatgaagataaggtactcattagc |
203 |
Q |
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| T |
2185749 |
tattaaataaaaattataccaaaggaaaagcataagtctagatgttctggtaggtagtgtcatgcatttaactagaaatgaagataaggtactcattagc |
2185650 |
T |
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| Q |
204 |
acttagcagacatatttaaagaaataagacaatccacaaagttctttatactaaaactgttgggaggccacatgttagcaaaacttgcatgcaattcttg |
303 |
Q |
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| T |
2185649 |
acttagcagacatatttaaagaaataagacaatccacaaagttctttatactaaaactgttgggaggccacatgttagcaaaacttgcatgcaattcttg |
2185550 |
T |
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| Q |
304 |
caataacaaataaagtttcttaatactacgttttgaaattgactttcttacatgcattccaggattatcatccaagatttggcacgaatacaaacacata |
403 |
Q |
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| T |
2185549 |
caataacaaataaagtttcttaatactacgttttgaaattgactttcttacatgcattccaggattatcatccaagatttggcacgaatacaaacacata |
2185450 |
T |
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| Q |
404 |
ttaatatgaaaaatgcgaacccaacaagagaatataagagagattcatctggtaaaggcattaaagtgagaaatacagctttgcatataaaatagaagtt |
503 |
Q |
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| T |
2185449 |
tttatatgaaaaatgcgaacccaacgagagaatataagagagattcatctggtaaaggcattacagtgagaaatacagctttgcatataaaatagaagtt |
2185350 |
T |
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| Q |
504 |
agtagcacaacctgtactcaacaaatatatgaatagacattcaccctgaaga |
555 |
Q |
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| T |
2185349 |
agtagcacaacctgtactcaacaaatatatgaatagacattcaccctgaaga |
2185298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 2185868 - 2185772
Alignment:
| Q |
8 |
cttacttgctaattttagacataagttcattgtaaaggaatctaattcaatttggttgagcctgtgatttgtctaggctttcacaagaggaagtgtt |
104 |
Q |
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| T |
2185868 |
cttacttgctaattttagacatacgttcattgtaaaggaatctaattcaatttggttgagcctgtgatttgtctaggctttcacaagaggaagtgtt |
2185772 |
T |
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