View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5201_high_21 (Length: 250)

Name: NF5201_high_21
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5201_high_21
NF5201_high_21
[»] chr2 (10 HSPs)
chr2 (19-218)||(42268687-42268886)
chr2 (14-109)||(42259937-42260032)
chr2 (15-107)||(42280488-42280580)
chr2 (130-218)||(42280580-42280668)
chr2 (11-81)||(42313599-42313669)
chr2 (11-109)||(42254339-42254431)
chr2 (11-89)||(42272465-42272547)
chr2 (11-89)||(42285499-42285581)
chr2 (17-81)||(42308879-42308943)
chr2 (17-50)||(42309635-42309668)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-109)||(488772-488867)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 42268687 - 42268886
Alignment:
Q  19 aagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttttgtattgag 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268687 aagcttgaagtgacagaatcgcatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttttgtattgag 42268786  T
Q  119 taaactcttactagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268787 taaactcttactagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag 42268886  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 42259937 - 42260032
Alignment:
Q  14 tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  42259937 tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaagttgtgcagatgttttatacaatattttt 42260032  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 42280488 - 42280580
Alignment:
Q  15 ctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||    
T  42280488 ctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaagttgtgcagatgttttatacaatattt 42280580  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 42280580 - 42280668
Alignment:
Q  130 tagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag 218  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  42280580 tagttatgtctatggatacttcttaaggtttacataaaccctagagtttttactatttcctttattgttgagatggcttttttcttaag 42280668  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 42313599 - 42313669
Alignment:
Q  11 aattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaag 81  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  42313599 aattcccaaagcatgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaag 42313669  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42254339 - 42254431
Alignment:
Q  11 aattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttt 109  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||      || |||||| ||||||||||| || ||||||||||| |||||    
T  42254339 aattctcaaaggttaaagtgagagaatcacatgtaagtagtaagggcttgt------atattgataacaagttgtgcagatattttatacaatgttttt 42254431  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 42272465 - 42272547
Alignment:
Q  11 aattctcaaagcttgaagtgacagaatcacatg----taagtagtaagggcttgtttattaatcttgatagcaagttgtgcaa 89  Q
    ||||||||||||||||||||||| |||  ||||    ||||||||| |||||||| |||| ||||||||| ||||| ||||||    
T  42272465 aattctcaaagcttgaagtgacaaaatggcatgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgcaa 42272547  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 42285499 - 42285581
Alignment:
Q  11 aattctcaaagcttgaagtgacagaatcacatg----taagtagtaagggcttgtttattaatcttgatagcaagttgtgcaa 89  Q
    ||||||||||||||||||||||| |||| || |    ||||||||| |||||||| |||| ||||||||| ||||| ||||||    
T  42285499 aattctcaaagcttgaagtgacaaaatcgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgcaa 42285581  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 42308879 - 42308943
Alignment:
Q  17 caaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaag 81  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||| | || ||||||||| ||||    
T  42308879 caaatcttgaagttacagaatcacatgtaagtagtgagggcatgtctgttgatcttgataacaag 42308943  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 42309635 - 42309668
Alignment:
Q  17 caaagcttgaagtgacagaatcacatgtaagtag 50  Q
    ||||||||||||| ||||||||||||||||||||    
T  42309635 caaagcttgaagttacagaatcacatgtaagtag 42309668  T

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Target: scaffold0002 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 488772 - 488867
Alignment:
Q  14 tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  488772 tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaagttgtgcagatgttttatacaatattttt 488867  T

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