View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_high_23 (Length: 248)
Name: NF5201_high_23
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 55506731 - 55506943
Alignment:
| Q |
20 |
cctagttcatgttaaaagtcatcttaaatgtacattcaaaatcaaagacgcaaacattttgcacccaattcttatatttagaaaaagcaaaaattaaaac |
119 |
Q |
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| T |
55506731 |
cctagttcatgttaaaagtcatcttaaatgtacattcaaaatcaaagacacaaacattttgcacccaattcttatatttagaaaaaacaaaaattaaaac |
55506830 |
T |
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| Q |
120 |
aacatgtctcgtgtttac---ctactctatgtatacgaccaacgc-nnnnnnnnnnnnnnnngcatgtttgttggttagtaaagtaaaaaccattattgc |
215 |
Q |
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| T |
55506831 |
aacatgtctcgtgtttacctactactctatgtatccgaccaacgctttttgttttattttttgcatgtttgttggttagtaaagtaaaaaccattattgc |
55506930 |
T |
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| Q |
216 |
ttcatgtgcttga |
228 |
Q |
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| T |
55506931 |
ttcatgtgcttga |
55506943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 43996919 - 43997001
Alignment:
| Q |
76 |
ttttgcacccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgaccaa |
158 |
Q |
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| T |
43996919 |
tttttcacccaattcttatatttataaaaggcaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaa |
43997001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 43633245 - 43633177
Alignment:
| Q |
93 |
atatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgaccaacgc |
161 |
Q |
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| T |
43633245 |
atatttataaaaggtaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaacgc |
43633177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 43997023 - 43997068
Alignment:
| Q |
178 |
gcatgtttgttggttagtaaagtaaaaaccattattgcttcatgtg |
223 |
Q |
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| T |
43997023 |
gcatgtttattggttagtaaagtaaaaaccattattgcttcatgtg |
43997068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 43633159 - 43633112
Alignment:
| Q |
178 |
gcatgtttgttggttagtaaa--gtaaaaaccattattgcttcatgtg |
223 |
Q |
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| T |
43633159 |
gcatgtttattggttagtaaaaagtaaaaaccattattgcttcatgtg |
43633112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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