View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_high_27 (Length: 239)
Name: NF5201_high_27
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_high_27 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 42269235 - 42269017
Alignment:
| Q |
18 |
cctcttgatttgtatcatgagatcctatttgctttgtaccacaaacctcaatggttcgtgtacattcatttgagtgatgttgcattgatggatttactac |
117 |
Q |
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| T |
42269235 |
cctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctcaatggttcgtgtacattcatttgagtgatgttgcattgatggatttactac |
42269136 |
T |
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| Q |
118 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42269135 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcatattca |
42269036 |
T |
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| Q |
218 |
ttttctgaaataggctgat |
236 |
Q |
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|||||||||||||| |||| |
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| T |
42269035 |
ttttctgaaataggttgat |
42269017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42281006 - 42280785
Alignment:
| Q |
18 |
cctcttgatttgtatcatgagatcctatttgctttgtaccacaaacctcaatggttcgtgtacattcatttgagtgatgttgcattgatggatttactac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42281006 |
cctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctcaatggttcgtgtacattcatttgagtgatgttgcattgatggttttactac |
42280907 |
T |
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| Q |
118 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
217 |
Q |
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| T |
42280906 |
cttttgatcttttttgtttctcctcgcatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
42280807 |
T |
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| Q |
218 |
ttttctgaaataggctgatctt |
239 |
Q |
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| T |
42280806 |
ttttctgaaataggttgatctt |
42280785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 42260139 - 42260040
Alignment:
| Q |
118 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
217 |
Q |
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|||||| |||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
42260139 |
ctttcgatcttttttgtttttccttacatcgatcttaaacacttttggcctatcctgctgaccctggtccatgacattacttgcacatccttcagattca |
42260040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 42254646 - 42254612
Alignment:
| Q |
18 |
cctcttgatttgtatcatgagatcctatttgcttt |
52 |
Q |
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| T |
42254646 |
cctcttgatttgtatcatgggatcctatttgcttt |
42254612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 42309947 - 42309885
Alignment:
| Q |
59 |
caaacctcaatggttcgtgtacattcatttgagtgatgttgcattgatggatttactaccttt |
121 |
Q |
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||||||||| | | || |||||||||||||||||||||||||| ||||| |||| ||| |||| |
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| T |
42309947 |
caaacctcactaggtcttgtacattcatttgagtgatgttgcactgatgaattttctatcttt |
42309885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 42313897 - 42313852
Alignment:
| Q |
76 |
tgtacattcatttgagtgatgttgcattgatggatttactaccttt |
121 |
Q |
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| T |
42313897 |
tgtacattcatttgagtggtgttgcactgatggattttctatcttt |
42313852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 488974 - 488875
Alignment:
| Q |
118 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
217 |
Q |
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|||||| |||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
488974 |
ctttcgatcttttttgtttttccttacatcgatcttaaacacttttggcctatcctgctgaccctggtccatgacattacttgcacatccttcagattca |
488875 |
T |
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