View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_high_28 (Length: 236)
Name: NF5201_high_28
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 37533413 - 37533623
Alignment:
| Q |
16 |
gtatatcaagttgagaccataaacaagtgtgtatgtcaaacacccaaatgtcgttgcaataacgtttatctccgacccctccaatgatgtatacctgaga |
115 |
Q |
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| T |
37533413 |
gtatatcaagttgagaccataaacaagtgtgtatgtcaaacacccaaatgtcgttgcaataacgtttatctccgacccctccaatgatgtatacctgaga |
37533512 |
T |
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| Q |
116 |
ttaatcatcacaagagtaagtggtaagtgt-aaaaaagtaccataaatagcgtaaataaataatgactctaattgttcgtgaaaaaaggttatcatcctc |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37533513 |
ttaatcatcacaagagtaagtggtaagtgtaaaaaaagtaccataaatagcataagtaaataatgactctaattgttcgtgaaaaaaggttatcatcctc |
37533612 |
T |
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| Q |
215 |
tcatgcctttg |
225 |
Q |
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| T |
37533613 |
tcatgcctttg |
37533623 |
T |
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