View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_high_4 (Length: 437)
Name: NF5201_high_4
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Original strand, 6425793 - 6426204
Alignment:
| Q |
5 |
gagtgagatgaacaaattcaaggtgtgctactgtattgatagatcaccaaaggagcatatcattcgtgaagnnnnnnnggacaacgatgttgtggaattt |
104 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6425793 |
gagttagatgaacaaattcttggtgtgctactgtattgataga---ccaaaggagcatatcattcgtgaagtttttttggacaacgatgttgtggaattt |
6425889 |
T |
|
| Q |
105 |
ctcatcaaaatccatctttcatactttctcaagctaatgaaaggatttagaggtttagtagtaataaagagtattggtttaagagtgtcatcgagtttat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6425890 |
ctcatcaaaatccatctttcatactttctcaagctaatgaaaggatttagaggtttagtagtaataaagagtataggtttaagagtgtcatcgagtttat |
6425989 |
T |
|
| Q |
205 |
gttgatcgatactctcatcgagtttggcatcaagctataaattcacatcatggatgaaagttcgcgcgagcaggtccaacgaacaatcaagttttattca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6425990 |
gttgatcgatactctcatcgagtttggcatcaagctataaattcacatcatgaatgaaagttcgcatgagcaggtccaacgaacaatcaagttttattca |
6426089 |
T |
|
| Q |
305 |
acaataagagattgatatctcttgacttacaacttcaattgggtttttgaaatgtgatattgattctgcaattttctttaagcagaagtgtgttgaggtc |
404 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6426090 |
acaataagagattgatatttcttgacttacaacttcaattgggtttttgaaatgtgatattgattctgcaattttctttaagcagaagtgtgttgaggtc |
6426189 |
T |
|
| Q |
405 |
actatttaatgtata |
419 |
Q |
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||||||||||||||| |
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| T |
6426190 |
actatttaatgtata |
6426204 |
T |
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