View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_low_1 (Length: 833)
Name: NF5201_low_1
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 373 - 815
Target Start/End: Complemental strand, 929174 - 928742
Alignment:
| Q |
373 |
atgatgtgtttctccgttgcttgctagtcaggaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt |
472 |
Q |
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| T |
929174 |
atgatgtgtttctccgttgct----agtcaggaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt |
929079 |
T |
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| Q |
473 |
gtggatgttccattccagttcatcaactaattaaggattgactcaaaaatttagagac--gggtatatatttgaatgtaattttaagtgcattgttcatt |
570 |
Q |
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| T |
929078 |
gtggatgttccattccagttcatcaactaattaaggattgactcaaaaatttagagacaggggtatatatttgaatg---ttttaagtgcattgttcatt |
928982 |
T |
|
| Q |
571 |
tgggatgttacttggttaaactaattcaattcatttatttaactgaccaaatcaattatattgtattggaatcaaaatcatatgatatgataatgtttca |
670 |
Q |
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| T |
928981 |
tgggatgttacttggttaaactaattcaattcatttatttaactgaccaaatcaattatattgtattggaatcaaaatc-----atatgataatgtttca |
928887 |
T |
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| Q |
671 |
ctatttgaccctannnnnnnaacattgatttggatcccaataaacacatagtcaagtcaagtcaaacatggtagacacacaccgacagaaagcaatcttg |
770 |
Q |
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| T |
928886 |
ctatttaaccctatttttttaacattgatttggatcccattaaacacatagtcaagtcaagtcaaacatggtagacacacaccgacagaaagcaatcttg |
928787 |
T |
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| Q |
771 |
gaatccccttaatacccttttcttgcttgatcccatgttccatgt |
815 |
Q |
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| T |
928786 |
gaatccccttaatacccttttcttgcttgatcccatgttccatgt |
928742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 929877 - 929746
Alignment:
| Q |
1 |
aaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttgaaggaaactcaatgaatg |
100 |
Q |
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| T |
929877 |
aaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttgaaggaaactcaatgaatg |
929778 |
T |
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| Q |
101 |
taagcggcatagtgtcgcatattaaaatggtt |
132 |
Q |
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| T |
929777 |
taagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 929340 - 929256
Alignment:
| Q |
296 |
tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
380 |
Q |
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| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgttgtg |
929256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 929441 - 929362
Alignment:
| Q |
222 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
301 |
Q |
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| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 1201514 - 1201614
Alignment:
| Q |
227 |
atacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtt----tcttattcggactttctttaatgtttc |
322 |
Q |
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| T |
1201514 |
atacatttttcatatcatacaaaaacttcacgaggtcctgattgtgagttattgcattgtcttactgttttaatcttattcagattatctttaatgtttc |
1201613 |
T |
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| Q |
323 |
a |
323 |
Q |
| |
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| |
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| T |
1201614 |
a |
1201614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 1201640 - 1201696
Alignment:
| Q |
324 |
gaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
380 |
Q |
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| T |
1201640 |
gaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtg |
1201696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
145 |
ggatggaatcgaggactaaaccgttaaacggttat |
179 |
Q |
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| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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