View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5201_low_10 (Length: 353)

Name: NF5201_low_10
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5201_low_10
NF5201_low_10
[»] chr5 (2 HSPs)
chr5 (38-271)||(13110161-13110398)
chr5 (38-271)||(13040167-13040405)
[»] chr3 (3 HSPs)
chr3 (122-268)||(44762448-44762594)
chr3 (38-93)||(44763648-44763704)
chr3 (223-269)||(40700840-40700886)
[»] chr4 (3 HSPs)
chr4 (134-256)||(24155708-24155830)
chr4 (128-269)||(29539734-29539872)
chr4 (38-93)||(29539641-29539696)
[»] chr2 (4 HSPs)
chr2 (128-271)||(7671037-7671181)
chr2 (134-271)||(16567074-16567212)
chr2 (196-271)||(18666029-18666104)
chr2 (196-256)||(15262251-15262311)
[»] chr7 (4 HSPs)
chr7 (134-271)||(10027085-10027223)
chr7 (122-255)||(45979755-45979890)
chr7 (178-269)||(39645567-39645657)
chr7 (196-269)||(39645658-39645731)
[»] chr1 (3 HSPs)
chr1 (128-271)||(45791984-45792127)
chr1 (155-271)||(50004266-50004382)
chr1 (163-271)||(4952043-4952151)
[»] chr8 (2 HSPs)
chr8 (134-271)||(7548666-7548805)
chr8 (178-241)||(38503712-38503775)
[»] chr6 (1 HSPs)
chr6 (196-271)||(4043534-4043609)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 13110161 - 13110398
Alignment:
Q  38 aattgaattatgtaattgaagaagaagacggcacccctaagaaaaaggaagatgatgccannnnnnnn-aagagacgannnnnnn---ataacattgtat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| |          |||| || ||||    
T  13110161 aattgaattatgtaattgaagaagaagacggcacccctaagaaaaaggaagatgatgccatttttttttaagagacaattttttttttataagatcgtat 13110260  T
Q  134 aattaataatagcttgattacatttaattaaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatg 233  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110261 aattaataatagcttgattacatttaattaaaaaagttagaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatg 13110360  T
Q  234 tttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  13110361 tttgttatcatgtgtgcatcaaacatatgataggataa 13110398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 13040167 - 13040405
Alignment:
Q  38 aattgaattatgtaattgaagaagaagacggcacccctaagaaaaaggaagatgatgccannnnnnnn-aagagacgannnnnnn----ataacattgta 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| |           |||| || |||    
T  13040167 aattgaattatgtaattgaagaagaagacggcacccctaagaaaaaggaagatgatgccatttttttttaagagacaatttttttttttataagatcgta 13040266  T
Q  133 taattaataatagcttgattacatttaattaaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattat 232  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13040267 taattaataatagcttgattacatttaattaaaaaagttagaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattat 13040366  T
Q  233 gtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  13040367 gtttgttatcatgtgtgcatcaaacatatgataggataa 13040405  T

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Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 44762594 - 44762448
Alignment:
Q  122 ataacattgtataattaataatagcttgattacatttaattaaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgta 221  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||   | |||||||||||||||||||| || ||    
T  44762594 ataacattggataattaataatagcttgattgcatttaattaaaaaagttaaaacatatcattaattacctgggtaattttgtcatttaattgtaatata 44762495  T
Q  222 tatgatattatgtttgttatcatatgtgcatcaaatatatgatagga 268  Q
    ||| |||| |||||||||||||| ||||||||||| |||||||||||    
T  44762494 tataatatcatgtttgttatcatgtgtgcatcaaacatatgatagga 44762448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 44763704 - 44763648
Alignment:
Q  38 aattgaattatgtaattgaagaagaagacggcacccctaag-aaaaaggaagatgat 93  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  44763704 aattgaattatgtaattgaagaagaagacggcacccttaagaaaaaaggaagatgat 44763648  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 40700886 - 40700840
Alignment:
Q  223 atgatattatgtttgttatcatatgtgcatcaaatatatgataggat 269  Q
    ||||||| |||||||||||||| ||||||||||| | ||||||||||    
T  40700886 atgatatcatgtttgttatcatgtgtgcatcaaacacatgataggat 40700840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 24155708 - 24155830
Alignment:
Q  134 aattaataatagcttgattacatttaattaaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatg 233  Q
    ||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  24155708 aattaataatagcttaattgtatttaattaaaaaagttaaaacatataattaattacaaggctaattttgtcatttaatagtgatatatatgatattatg 24155807  T
Q  234 tttgttatcatatgtgcatcaaa 256  Q
    ||||||||| | |||||||||||    
T  24155808 tttgttatcgtgtgtgcatcaaa 24155830  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 269
Target Start/End: Original strand, 29539734 - 29539872
Alignment:
Q  128 ttgtataattaataatagcttgattacatttaattaaaaat-gttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatga 226  Q
    |||||| | |||||| ||||| |||  |||||||||||||  || |||||||||||||||||| || | ||||||||||||||||||||||  |||||||    
T  29539734 ttgtatgactaataacagcttaattgtatttaattaaaaaaagtaaaaacatataattaattataagggtaattttgtcatttaattgtga--tatatga 29539831  T
Q  227 tattatgtttgttatcatatgtgcatcaaatatatgataggat 269  Q
    |||||||||||||||    ||||||||||||||||||||||||    
T  29539832 tattatgtttgttat--agtgtgcatcaaatatatgataggat 29539872  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 29539641 - 29539696
Alignment:
Q  38 aattgaattatgtaattgaagaagaagacggcacccctaagaaaaaggaagatgat 93  Q
    ||||||||| |||||||||||||||||| || || ||||  |||||||||||||||    
T  29539641 aattgaattctgtaattgaagaagaagatggaactcctacaaaaaaggaagatgat 29539696  T

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Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 7671037 - 7671181
Alignment:
Q  128 ttgtataattaataatagcttgattacatttaatta-aaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatga 226  Q
    |||||||||||||| |||||| |||| ||||||||| |||||||||||| ||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  7671037 ttgtataattaatattagcttaattatatttaattagaaaatgttaaaatatataattaattataagggtaattttgtcatttaattgtgatatatatga 7671136  T
Q  227 tattatgtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    ||||||||||||||| || ||| || |||| || |||||||||||    
T  7671137 tattatgtttgttataatgtgtacaacaaacatgtgataggataa 7671181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 16567212 - 16567074
Alignment:
Q  134 aattaataatagcttgattacatttaattaaaaatg-ttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattat 232  Q
    ||||||||||||| | ||||  |||||||||||| | |||||| ||||||||||||| || | ||||||||||||||| || |||| |||||||||||||    
T  16567212 aattaataatagcctaattatttttaattaaaaagggttaaaatatataattaattataagggtaattttgtcatttagttatgatttatatgatattat 16567113  T
Q  233 gtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    |||||||||||| ||||||||||| || ||||| |||||    
T  16567112 gtttgttatcatgtgtgcatcaaacatgtgatatgataa 16567074  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 18666029 - 18666104
Alignment:
Q  196 taattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  18666029 taattttgtcatttaattgtgatatatatgatattatgtttgttatcatgtgtgcatcaaacatgtgataggataa 18666104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 15262311 - 15262251
Alignment:
Q  196 taattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatcaaa 256  Q
    ||||||| ||||||||||||||| ||||| ||||  | ||||||||||| |||||||||||    
T  15262311 taattttatcatttaattgtgatatatatcatatcctatttgttatcatgtgtgcatcaaa 15262251  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 10027085 - 10027223
Alignment:
Q  134 aattaataatagcttgattacatttaattaaaaatg-ttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattat 232  Q
    ||||||||||||||| |||  ||||||||||||| | |||||| |||||||| |||| ||   |||||||||||||||||| |||| |||||||||||||    
T  10027085 aattaataatagcttaattttatttaattaaaaagggttaaaatatataatttattataagcgtaattttgtcatttaattatgatttatatgatattat 10027184  T
Q  233 gtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
     |||||||||||||||||||||||||| ||||| |||||    
T  10027185 atttgttatcatatgtgcatcaaatatgtgatatgataa 10027223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 45979890 - 45979755
Alignment:
Q  122 ataacattgtataattaataatagcttgattacatttaatt--aaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatg 219  Q
    ||||| || |||| ||||||||| ||| |||| ||||||||  ||||| |||||| ||||||||||||||  | | |||||||||||||| ||| ||||     
T  45979890 ataactttatatagttaataataacttaattatatttaatttaaaaaaagttaaagcatataattaattatgagggtaattttgtcatttcattatgata 45979791  T
Q  220 tatatgatattatgtttgttatcatatgtgcatcaa 255  Q
    ||| || |||||| ||||||||| | ||||||||||    
T  45979790 tatttgctattatatttgttatcctgtgtgcatcaa 45979755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 39645567 - 39645657
Alignment:
Q  178 tataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatcaaatatatgataggat 269  Q
    ||||||||||||||  | ||||| ||||||||||||||||| | |||||||| || ||| ||||||| |||||| |||| ||||||||||||    
T  39645567 tataattaattacaggg-taattatgtcatttaattgtgatatgtatgatatcatatttcttatcatgtgtgcaccaaacatatgataggat 39645657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 39645658 - 39645731
Alignment:
Q  196 taattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatcaaatatatgataggat 269  Q
    ||||| |||||||||| |||||| | |||||||| |||||| |||||||||||||| |||| | ||||||||||    
T  39645658 taattatgtcatttaactgtgatatgtatgatatcatgtttcttatcatatgtgcaccaaacaaatgataggat 39645731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 45792127 - 45791984
Alignment:
Q  128 ttgtataattaataatagcttgattacatttaattaaaaatg-ttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatga 226  Q
    ||||||||||||||||||||| |||| ||||||||||||| | |||||| ||||||||| ||| || | || ||||||||||||||| |||| |||||||    
T  45792127 ttgtataattaataatagcttaattatatttaattaaaaaaggttaaaatatataatta-ttataagggtagttttgtcatttaattatgatatatatga 45792029  T
Q  227 tattatgtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    |||||||||||||||||| ||| |   ||| ||||||||||||||    
T  45792028 tattatgtttgttatcatgtgtactataaacatatgataggataa 45791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 50004382 - 50004266
Alignment:
Q  155 atttaattaaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatca 254  Q
    ||||||||||||| ||||||| ||||||||||||| |  | |  ||||||| ||||||| |||| |||||||||| |||||||||||||| |||||| ||    
T  50004382 atttaattaaaaaggttaaaatatataattaattatatgggtgcttttgtcgtttaattatgatatatatgatatcatgtttgttatcatgtgtgcacca 50004283  T
Q  255 aatatatgataggataa 271  Q
    || ||||||||||||||    
T  50004282 aacatatgataggataa 50004266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 4952043 - 4952151
Alignment:
Q  163 aaaaatgttaaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatcaaatatatg 262  Q
    ||||| ||||||| ||||||||||||| || | || |||||| |||||||| |||| |||||||||| ||||||||||| || |||||| |||| |||||    
T  4952043 aaaaaggttaaaatatataattaattataagggtacttttgttatttaattatgatatatatgatatcatgtttgttattatgtgtgcaccaaacatatg 4952142  T
Q  263 ataggataa 271  Q
    |||||||||    
T  4952143 ataggataa 4952151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 7548666 - 7548805
Alignment:
Q  134 aattaataatagcttgattacatttaattaaaaatgtt--aaaacatataattaattacaatgataattttgtcatttaattgtgatgtatatgatatta 231  Q
    ||||||||||||||| |||  ||||||||||||| | |  |||| |||||||||||||||| | |||||||||||||||||| | ||  |||||||||||    
T  7548666 aattaataatagcttaattttatttaattaaaaagggttaaaaatatataattaattacaagggtaattttgtcatttaattattattgatatgatatta 7548765  T
Q  232 tgtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    ||| || |||||| ||||||||||| || ||||| |||||    
T  7548766 tgtctgctatcatgtgtgcatcaaacatgtgatatgataa 7548805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 38503775 - 38503712
Alignment:
Q  178 tataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatgtttgttat 241  Q
    ||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  38503775 tataattaattgcaagggtaattatgtcatttaattgtgatatatatgatattatgtttgttat 38503712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 4043609 - 4043534
Alignment:
Q  196 taattttgtcatttaattgtgatgtatatgatattatgtttgttatcatatgtgcatcaaatatatgataggataa 271  Q
    ||||||||||||||||||||||| ||||| ||||  | ||| ||||||| ||||||||||| | ||||| ||||||    
T  4043609 taattttgtcatttaattgtgatatatatcatatcttatttattatcatgtgtgcatcaaacacatgatgggataa 4043534  T

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