View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_low_19 (Length: 269)
Name: NF5201_low_19
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 13519367 - 13519258
Alignment:
| Q |
14 |
ccaagaatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaacc |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519367 |
ccaataatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaacc |
13519268 |
T |
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| Q |
114 |
ctcatcatca |
123 |
Q |
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|||||||||| |
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| T |
13519267 |
ctcatcatca |
13519258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 13608900 - 13608791
Alignment:
| Q |
14 |
ccaagaatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaacc |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608900 |
ccaataatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaacc |
13608801 |
T |
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| Q |
114 |
ctcatcatca |
123 |
Q |
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|||||||||| |
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| T |
13608800 |
ctcatcatca |
13608791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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