View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_low_2 (Length: 510)
Name: NF5201_low_2
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Original strand, 13713546 - 13714020
Alignment:
| Q |
10 |
attatactcaagttgtctggcgcgattcggttcgggttggatgtgctaaggtaaagtgtaatgatggccgtagcaccattattagttgtaactatgatcc |
109 |
Q |
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| T |
13713546 |
attatactcaagttgtctggcgcgattcggttcgggttggatgtgctaaggttaagtgtaatgatggtcgtagcaccattattagttgtaactatgatcc |
13713645 |
T |
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| Q |
110 |
acctggtaattatattggtcagaggccttttaatattagtccttttgaagtgccattgagcttcaaccatggtagttttgatgacaagtaaggtaagata |
209 |
Q |
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| T |
13713646 |
acctggtaattatattggtcagaggccttttgatattagtccttttgaagtgccattgagcttcaaccatggtagttttgatgacaagtaaggtaagata |
13713745 |
T |
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| Q |
210 |
gataagaagtgtggtgtttaatgtgaattaaataaatggatgtggccattctgtatatatgttatagtatacagagagattcatattgtatgtgttttta |
309 |
Q |
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| T |
13713746 |
gataagaagtgtggtgtttaatgtgaattaaataaatggatgtggccattctgtatatatgttatagtatacagagagattcatattgtatgtgttttta |
13713845 |
T |
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| Q |
310 |
gttttgagattaatggattct------------caagcttgtttagtttggacaaattgtgtatgcatacataccaaaccaaataactataatacacttg |
397 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13713846 |
gttttgagattaatggattctcaagcctgtgtgcaagcttgtttaatttggacaaattgtgtatgcatacataccaaaccaaataactataatacacttg |
13713945 |
T |
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| Q |
398 |
cataaataaaaatgtttacttcacctaaaacttggcttgcaagtaccactgttgatgtgaaagaatgatggaaat |
472 |
Q |
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| T |
13713946 |
cataaataaaaatgtttacttcacctaaaacttggcttgcaagtaccactgttgatgtgaaagaatgatggaaat |
13714020 |
T |
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