View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5201_low_20 (Length: 264)

Name: NF5201_low_20
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5201_low_20
NF5201_low_20
[»] chr6 (10 HSPs)
chr6 (1-247)||(2997723-2997969)
chr6 (1-247)||(2934105-2934351)
chr6 (3-228)||(2982391-2982622)
chr6 (1-233)||(3004107-3004339)
chr6 (1-247)||(2926666-2926912)
chr6 (1-247)||(2951448-2951694)
chr6 (84-247)||(2972504-2972669)
chr6 (63-228)||(2659391-2659556)
chr6 (1-247)||(2963988-2964240)
chr6 (179-247)||(2929392-2929460)
[»] chr7 (1 HSPs)
chr7 (7-247)||(3338687-3338927)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-228)||(35553-35780)
[»] chr3 (1 HSPs)
chr3 (76-131)||(49613037-49613092)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 2997723 - 2997969
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    ||||| |||||||| |||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997723 gtttcggaataacaacgtttgaaattagataagatagaatctacgtagcatactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 2997822  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagttt 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  2997823 gaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctgcgttgagttt 2997922  T
Q  201 gcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  2997923 gcgaattttagaggggaccttgtagatgcaacagtcaccggttgaag 2997969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2934351 - 2934105
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    |||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||  |||| |||||||||| | |||||||    
T  2934351 gtttcagaataacaacgtttgaaatcagataagatagattctatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagt 2934252  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagttt 200  Q
     |||||||||||||   ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| || |    
T  2934251 aaatgagtttctgactttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtct 2934152  T
Q  201 gcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
    ||||||   | | |||||||| |||||| |||||||| |||||||||    
T  2934151 gcgaataacataagggaccttatagatgcaacagtcatcggttgaag 2934105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 2982622 - 2982391
Alignment:
Q  3 ttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagtga 102  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  2982622 ttcagaataacagtgtttgaaatcagataagatagaatctacgtagcagaccaagtcgtttaaagatgcctcggttcgttgaagaaaagctttgaagtga 2982523  T
Q  103 atgagtttctgaggctccatgttttggagctg------tggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattga 196  Q
    ||||| |||||| | |||||||||||||| ||      | | ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  2982522 atgagcttctgacgttccatgttttggagatggaggcctaggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgtatgcgttttcgttga 2982423  T
Q  197 gtttgcgaattttagaggggaccttgtagatg 228  Q
     | |||||||   |||||||||||||||||||    
T  2982422 ctgtgcgaataacagaggggaccttgtagatg 2982391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3004107 - 3004339
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    ||||| |||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| |||||||||||||  |||| |||||||||| | |||||||    
T  3004107 gtttcggaataacaacgtttgaaatcagataagacagattctatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagt 3004206  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagttt 200  Q
     |||||||||||||   ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| || |    
T  3004207 aaatgagtttctgattttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtct 3004306  T
Q  201 gcgaattttagaggggaccttgtagatgaaaca 233  Q
    ||||||   | ||||||||||||||||| ||||    
T  3004307 gcgaataacataggggaccttgtagatgcaaca 3004339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2926912 - 2926666
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||| |||||||||||||  |||| |||||||||| | |||||||    
T  2926912 gtttcggaataacaacgtttgaaatcagataagatagattctatgtagccgactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagt 2926813  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagttt 200  Q
     |||||||||||||   ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||  ||||||||||||||||||  ||| || |    
T  2926812 aaatgagtttctgactttccatgttttggagctggggttgaccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgtctttgttgtgtct 2926713  T
Q  201 gcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
    ||||||   | |||||||||| |||||  |||||||| |||||||||    
T  2926712 gcgaataacataggggaccttatagatacaacagtcatcggttgaag 2926666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2951694 - 2951448
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    |||||||||||||| | ||||||||||||||| ||||| |||| ||||   |||||||| |||||||||||||  |||| |||||||||| | |||||||    
T  2951694 gtttcagaataacaacttttgaaatcagataagatagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagt 2951595  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagttt 200  Q
     |||||||||||||   ||||||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||||  ||| |  |    
T  2951594 aaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgcct 2951495  T
Q  201 gcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
    ||||||   | ||||||||||||||||| |||| ||| | |||||||    
T  2951494 gcgaataacataggggaccttgtagatgcaacactcatctgttgaag 2951448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 2972669 - 2972504
Alignment:
Q  84 gagaaaagctttgaagtgaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtat 183  Q
    ||||||||||||||||| ||||||||| ||| | ||||||||||||||||| |  ||| | ||||||||||||||||||||||||||  |||| ||||||    
T  2972669 gagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtgtat 2972570  T
Q  184 --gcgtcttcattgagtttgcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
      || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2972569 atgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaag 2972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 2659391 - 2659556
Alignment:
Q  63 taaacatgcctcagttcgttggagaaaagctttgaagtgaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatg 162  Q
    ||||||||| |  |||||||||||||||||||| |||| ||||||||| ||| | ||||||||||||||||| || ||| ||||||||||||||||||||    
T  2659391 taaacatgcattggttcgttggagaaaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatg 2659490  T
Q  163 gaaacgacagtgggggtgtatgcgtcttcattgagtttgcgaattttagaggggaccttgtagatg 228  Q
    ||||||| ||||||||||||||| | ||| |||||| |||||||   |||||||||||||||||||    
T  2659491 gaaacgagagtgggggtgtatgctttttcgttgagtgtgcgaatagcagaggggaccttgtagatg 2659556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2964240 - 2963988
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    ||||| |||||||||| ||||||||||||||| |||| ||||| |||| |||| |  || ||||||  || ||| ||||||||||||||| |||||||||    
T  2964240 gtttcggaataacagcatttgaaatcagataagatagcatctatgtagtagaccatttcgtttaaagttgtctcggttcgttggagaaaatctttgaagt 2964141  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatg------accatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcatt 194  Q
     ||||||||| ||  | ||||||||||||| ||| || ||      ||| |||||||||||||| ||||||||||   ||||||||||||||| ||| ||    
T  2964140 aaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgtatgcgttttcgtt 2964041  T
Q  195 gagtttgcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
    |||| ||||||| | ||||||||||||||||||| |||| |||  ||||||||    
T  2964040 gagtgtgcgaatatcagaggggaccttgtagatgcaacaatcataggttgaag 2963988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 2929460 - 2929392
Alignment:
Q  179 tgtatgcgtcttcattgagtttgcgaattttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| | |||||||    
T  2929460 tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgtagatgcaacagtcatcagttgaag 2929392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 3338927 - 3338687
Alignment:
Q  7 gaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagtgaatga 106  Q
    |||||||| ||||||||||||| ||| ||||| ||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||    
T  3338927 gaataacaacgtttgaaatcaggtaagatagactctacgtagaagaccaagtcttttaaacatgcctcggttcgttggagaaaagctttgaagtaaatga 3338828  T
Q  107 gtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagtttgcgaat 206  Q
    |||| ||| | |||||||||| |||  | |  | ||| |||||||||||||||||||||||||   | ||||||||||||||||||||| ||||||||||    
T  3338827 gtttgtgacgttccatgttttagagtcgggttttaccgtggtgaaaggggccaatggaaacgaacttaggggtgtatgcgtcttcattgtgtttgcgaat 3338728  T
Q  207 tttagaggggaccttgtagatgaaacagtcaccggttgaag 247  Q
       |||||| || ||||||||| |||||||| |||||||||    
T  3338727 aacagagggtactttgtagatgcaacagtcatcggttgaag 3338687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35553 - 35780
Alignment:
Q  1 gtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagt 100  Q
    ||||| |||||||| | ||||||||||||||| ||||||| || || || ||  |||    ||||| |||| |  ||||||||||||||| |||||||||    
T  35553 gtttccgaataacaacatttgaaatcagataagatagaatatatgtcgctgatcaagatgcttaaagatgcattggttcgttggagaaaatctttgaagt 35652  T
Q  101 gaatgagtttctgaggctccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagttt 200  Q
     ||||||||| ||| | |||||||||| |||||| || ||||| ||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||    
T  35653 aaatgagtttgtgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgtgttt 35752  T
Q  201 gcgaattttagaggggaccttgtagatg 228  Q
    ||||||   |||||||||||||||||||    
T  35753 gcgaataacagaggggaccttgtagatg 35780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 49613092 - 49613037
Alignment:
Q  76 gttcgttggagaaaagctttgaagtgaatgagtttctgaggctccatgttttggag 131  Q
    ||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||||    
T  49613092 gttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggag 49613037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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