View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5201_low_21 (Length: 255)

Name: NF5201_low_21
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5201_low_21
NF5201_low_21
[»] chr2 (13 HSPs)
chr2 (1-187)||(30023263-30023449)
chr2 (1-187)||(30118673-30118859)
chr2 (1-187)||(30133373-30133559)
chr2 (1-180)||(30081676-30081855)
chr2 (1-187)||(30037248-30037432)
chr2 (1-187)||(30231386-30231570)
chr2 (1-168)||(30106736-30106903)
chr2 (1-101)||(30068475-30068573)
chr2 (1-110)||(30183807-30183916)
chr2 (1-221)||(30172159-30172378)
chr2 (1-101)||(30790542-30790643)
chr2 (1-172)||(30252282-30252452)
chr2 (1-122)||(30279797-30279918)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 30023449 - 30023263
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||  | ||||||||||||||||| |||||| ||| || | ||||||||||||||||||||||||  || | |||||||||||||| |    
T  30023449 tcatcccacagtttctcacaattgatcttagacagcttcaatagttcaaggtggggcatcacaacctattaacaaaaatatcctcatgaagatcttatct 30023350  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggtacataatg 187  Q
    ||| ||||||||||||||||||||||||  |||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  30023349 ttcctattaatttatgttgagaaaaatacaaacaatcattgagatgaaaagatagttcactgtgaatatctaatgaggtacataatg 30023263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 30118673 - 30118859
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||  | ||||||||||||||||| |||||| ||| || | ||||||||||||||||||||||||  || | |||||||||||||| |    
T  30118673 tcatcccacagtttctcacaattgatcttagacagcttcaatagttcaaggtggggcatcacaacctattaacaaaaatatcctcatgaagatcttatct 30118772  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggtacataatg 187  Q
    ||| ||||||||||||||||||||||||  |||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  30118773 ttcctattaatttatgttgagaaaaatacaaacaatcattgagatgaaaagatagttcactgtgaatatctaatgaggtacataatg 30118859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 30133373 - 30133559
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||  | ||||||||||||||| | |||||| ||| || | ||||||||||||||||||||||||  || | | |||||||||||| |    
T  30133373 tcatcccacagtttctcacaattgatcttagacaacttcaatagttcaaggtggggcatcacaacctattaacaaaaatatcctcgtgaagatcttatct 30133472  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggtacataatg 187  Q
    ||| ||||||||||||||||||||||||  |||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  30133473 ttcctattaatttatgttgagaaaaatacaaacaatcattgagatgaaaagatagttcactgtgaatatctaatgaggtacataatg 30133559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 30081855 - 30081676
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||  | ||||||| ||||||||| |||||| ||| || | ||||||||||||||||||||||||  || | |||||||||||||| |    
T  30081855 tcatcccacagtttctcacaattgatgttagacagcttcaatagttcaaggtggggcatcacaacctattaacaaaaatatcctcatgaagatcttatgt 30081756  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggta 180  Q
    ||| ||||||||||||||||||||||||  |||||| ||||||||||||||| ||| || ||||||||||||||||||||    
T  30081755 ttcctattaatttatgttgagaaaaatacaaacaatcattgagatgaaaagatagttcactgtgaatatctaatgaggta 30081676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 30037248 - 30037432
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||  | ||||||| ||||||||| |||||| ||| || | ||||||||||||||||||||||||  || | ||||||||||||||||    
T  30037248 tcatcccacagtttctcacaattgatgttagacagcttcaatagttcaaggtggggcatcacaacctattaacaaaaatatcctcatgaagatcttattt 30037347  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggtacataatg 187  Q
      | ||||||||||||||||||||||||  |||||| |||||||||||||||  || || |||||||||||||||||||||||||||    
T  30037348 --cctattaatttatgttgagaaaaatacaaacaatcattgagatgaaaagattgttcactgtgaatatctaatgaggtacataatg 30037432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 30231386 - 30231570
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||  | ||||||| ||||||||| |||||| ||| || | ||||||||||||||||||||||||  || | ||||||||||||||||    
T  30231386 tcatcccacagtttctcacaattgatgttagacagcttcaatagttcaaggtggggcatcacaacctattaacaaaaatatcctcatgaagatcttattt 30231485  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggtacataatg 187  Q
      | ||||||||||||||||||||||||  |||||| |||||||||||||||  || || |||||||||||||||||||||||||||    
T  30231486 --cctattaatttatgttgagaaaaatacaaacaatcattgagatgaaaagattgttcactgtgaatatctaatgaggtacataatg 30231570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 30106736 - 30106903
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||    ||||||||||||||||| |||||| ||| || | | ||||||||||||||||||||||  || |  |||||||||||||||    
T  30106736 tcatcccacagtttctcgcaattgatcttagacagcttcaatagttcaaggtggagcatcacaacctattaacaaaaatatccttatgaagatcttattt 30106835  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaata 168  Q
    ||| ||||||||||||||||||||||||  |||||| ||||||||||||||| ||| || ||||||||    
T  30106836 ttcctattaatttatgttgagaaaaataaaaacaatcattgagatgaaaagatagttcactgtgaata 30106903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30068573 - 30068475
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||| || | ||||||||||||||||||||||||  |||  ||||||||||||||||    
T  30068573 tcatcccacagtttcctagaattgatcttagacagcttcaagagttcaaggtggggcatcacaacctattaacaaaaaaatt--catgaagatcttattt 30068476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30183807 - 30183916
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||||||||||||| ||||||||||| ||| |||||| ||| || | ||||||| ||||||||||||| || ||||| |||||| ||||||| |    
T  30183807 tcatcccacagtttcctagatttgatcttagagagcttcaatagttcaaggtggggcatctcaacctattaacataaagattctcatgaacatcttatat 30183906  T
Q  101 ttcatattaa 110  Q
    ||||||||||    
T  30183907 ttcatattaa 30183916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30172378 - 30172159
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||| ||||| ||||| ||||| || |||||| |||| | ||| || | ||||||  |||||| ||||||||| |||||   |||||| |||||||    
T  30172378 tcatcccaaagttttctagagttgatatttgacagcttcaagagttcaaggtggggcattccaacctgttaacaaaaagattcttgtgaagaacttattt 30172279  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatctaatgaggtacataatgaaaatttaaatgt 200  Q
    |  ||||||||||||||||||| ||| | ||| |||||||||||||   ||| |   |||| |||| ||||||||||||||||||| | |||  |||| |    
T  30172278 tcaatattaatttatgttgagagaaaaaccaaaaataattgagatggtgagataacacattatgaaaatctaatgaggtacataat-agaatggaaatat 30172180  T
Q  201 atgggctttgatgaaacaaaa 221  Q
    ||||| |||||||||||||||    
T  30172179 atgggatttgatgaaacaaaa 30172159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30790643 - 30790542
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaac-aaaaggattcacatgaagatcttatt 99  Q
    |||||||||||||||||||||||||| ||||| ||| |||| | ||| || | ||||||| |||||||||||| |||||||||  |||||||||||||||    
T  30790643 tcatcccacagtttcctagaattgatattagaaagcttcaagagttcaaggtggggcatcccaacctattaacaaaaaggattatcatgaagatcttatt 30790544  T
Q  100 tt 101  Q
    ||    
T  30790543 tt 30790542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 30252452 - 30252282
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||| |||||| || ||||| ||||||||| |||| ||||| || | ||||||  |||||||||| ||||| ||||  | || ||||||||||     
T  30252452 tcatcccacaatttccttgagttgatattagacagcttcaagatttcaagctggggcattccaacctatta-caaaaagattgtcgtgtagatcttattc 30252354  T
Q  101 ttcatattaatttatgttgagaaaaatatcaacaataattgagatgaaaagacagtccattgtgaatatcta 172  Q
      ||||| |||||||||||||||||| | ||| |||||  |||||||  ||||||| |||  ||||||||||    
T  30252353 gacatataaatttatgttgagaaaaagaccaagaataagagagatgatgagacagttcatgatgaatatcta 30252282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30279918 - 30279797
Alignment:
Q  1 tcatcccacagtttcctagaattgatcttagacagcgtcaatatttccagattgggcatcacaacctattaacaaaaggattcacatgaagatcttattt 100  Q
    |||||||||| | |||||||  |||| |||||||||  ||| | ||| |||| ||||||| |||||| |||||||||  |||| ||| ||||||| ||||    
T  30279918 tcatcccacaatctcctagaggtgatattagacagctccaagagttcaagatggggcatcccaacctgttaacaaaaaaattctcataaagatctcattt 30279819  T
Q  101 ttcatattaatttatgttgaga 122  Q
     | |||||||||||||||||||    
T  30279818 gtaatattaatttatgttgaga 30279797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University