View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5201_low_22 (Length: 250)
Name: NF5201_low_22
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_22 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 42268687 - 42268886
Alignment:
| Q |
19 |
aagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttttgtattgag |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268687 |
aagcttgaagtgacagaatcgcatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttttgtattgag |
42268786 |
T |
|
| Q |
119 |
taaactcttactagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268787 |
taaactcttactagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag |
42268886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 42259937 - 42260032
Alignment:
| Q |
14 |
tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
42259937 |
tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaagttgtgcagatgttttatacaatattttt |
42260032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 42280488 - 42280580
Alignment:
| Q |
15 |
ctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
42280488 |
ctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaagttgtgcagatgttttatacaatattt |
42280580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 42280580 - 42280668
Alignment:
| Q |
130 |
tagttgtgtctatggatacttctttaggtttacataaaccctaaagtttttactatttcctttattgttgagatgtcttttttcttaag |
218 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42280580 |
tagttatgtctatggatacttcttaaggtttacataaaccctagagtttttactatttcctttattgttgagatggcttttttcttaag |
42280668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 42313599 - 42313669
Alignment:
| Q |
11 |
aattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaag |
81 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
42313599 |
aattcccaaagcatgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaag |
42313669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42254339 - 42254431
Alignment:
| Q |
11 |
aattctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttt |
109 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||| || ||||||||||| ||||| |
|
|
| T |
42254339 |
aattctcaaaggttaaagtgagagaatcacatgtaagtagtaagggcttgt------atattgataacaagttgtgcagatattttatacaatgttttt |
42254431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 42272465 - 42272547
Alignment:
| Q |
11 |
aattctcaaagcttgaagtgacagaatcacatg----taagtagtaagggcttgtttattaatcttgatagcaagttgtgcaa |
89 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||| |||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
42272465 |
aattctcaaagcttgaagtgacaaaatggcatgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgcaa |
42272547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 42285499 - 42285581
Alignment:
| Q |
11 |
aattctcaaagcttgaagtgacagaatcacatg----taagtagtaagggcttgtttattaatcttgatagcaagttgtgcaa |
89 |
Q |
| |
|
||||||||||||||||||||||| |||| || | ||||||||| |||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
42285499 |
aattctcaaagcttgaagtgacaaaatcgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgcaa |
42285581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 42308879 - 42308943
Alignment:
| Q |
17 |
caaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaag |
81 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||||| ||| | || ||||||||| |||| |
|
|
| T |
42308879 |
caaatcttgaagttacagaatcacatgtaagtagtgagggcatgtctgttgatcttgataacaag |
42308943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 42309635 - 42309668
Alignment:
| Q |
17 |
caaagcttgaagtgacagaatcacatgtaagtag |
50 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
42309635 |
caaagcttgaagttacagaatcacatgtaagtag |
42309668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 488772 - 488867
Alignment:
| Q |
14 |
tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtttattaatcttgatagcaagttgtgcaaatgttttatacaatattttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
488772 |
tctcaaagcttgaagtgacagaatcacatgtaagtagtaagggcttgtatattgatcttgataacaagttgtgcagatgttttatacaatattttt |
488867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University