View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5201_low_34 (Length: 209)
Name: NF5201_low_34
Description: NF5201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5201_low_34 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 549729 - 549527
Alignment:
| Q |
7 |
tcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaagaccttcctcccaacatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549729 |
tcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaagaccttcctcccaacatt |
549630 |
T |
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| Q |
107 |
cacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactttgttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
549629 |
cacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatcgtaacttgttcaaaaacaaactttgttg |
549530 |
T |
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| Q |
207 |
gtt |
209 |
Q |
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||| |
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| T |
549529 |
gtt |
549527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 23422899 - 23423097
Alignment:
| Q |
7 |
tcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaagaccttcctcccaacatt |
106 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
23422899 |
tcctacaccatctaccaaatccatcttaaactctcttccaccaaacattgattttacattccttcctcatatcaatatccaggaccttcctcccaacatt |
23422998 |
T |
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| Q |
107 |
cacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactttgtt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23422999 |
cacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactttgtt |
23423097 |
T |
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